Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq54 161 7e-35
seq10 132 3e-26
seq14 118 8e-22
>seq54
Length=312047
Score = 161 bits (178), Expect = 7e-35
Identities = 176/232 (76%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || ||||||||| || ||| |||||| ||||||||||| ||||
Sbjct 98810 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 98751
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| |||| || |||||||| ||||| ||||||| |||||||| || | ||
Sbjct 98750 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 98691
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| || ||||| ||| ||||| ||| || ||| | |||||||||| || ||||
Sbjct 98690 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCCA 98633
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
|||| | || || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 98632 CCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGAT 98581
>seq10
Length=843860
Score = 132 bits (146), Expect = 3e-26
Identities = 157/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||||||||| |||||| ||||||||||||||| || ||| |||| |||
Sbjct 384420 ACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCC 384361
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| ||||| || ||||| || | |||||||||||| | || | || ||||| ||
Sbjct 384360 AATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGG 384301
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | || ||||| | || || ||||||| |||||| ||||
Sbjct 384300 ATCTTCGACTTAACATTGT--CAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCT 384243
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || | ||||| ||||||||||||||
Sbjct 384242 TTCCAGTCAACGTCTTGACGAAGATTTGCAT 384212
Score = 125 bits (138), Expect = 5e-24
Identities = 150/202 (74%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| |||||| ||| ||||||||||||||||| || | ||| ||| | || ||
Sbjct 383965 CACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTC 383906
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || ||||||||||| || |||||||| | ||| | |||||||| |||
Sbjct 383905 AAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCCTG 383846
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | ||||| || | ||| || ||||| | || || |||
Sbjct 383845 AATCTTAGACTTGACATTGT--CGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTC 383788
Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327
|| || || |||||||| ||||
Sbjct 383787 TTGCCAGTAAGGGTCTTGACGA 383766
Score = 125 bits (138), Expect = 5e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || |||||| || |||||||| || | | ||| | || |||
Sbjct 384192 ACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCC 384133
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || |||||||||||||| || | ||| | || ||||| |||
Sbjct 384132 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGA 384073
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | || ||||| | ||||| ||||||| ||| || ||||||
Sbjct 384072 ATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTT 384013
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||||| |||||||| |||||
Sbjct 384012 CCAGTCAATGTCTTGACGAAGATCTGCAT 383984
>seq14
Length=768254
Score = 118 bits (130), Expect = 8e-22
Identities = 137/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| ||| | || || |||||||| ||||| ||||
Sbjct 490600 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 490659
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 490660 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 490719
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | ||||| ||||| ||||| |||||||||||
Sbjct 490720 --CGATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 490777
Query 44326 GAA 44328
|||
Sbjct 490778 GAA 490780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359987995714116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |