Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq930 192 7e-44
>seq930
Length=1444712
Score = 192 bits (212), Expect = 7e-44
Identities = 418/628 (67%), Gaps = 56/628 (9%)
Strand=Plus/Minus
Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCG 145749
|| ||||||| |||||| || || || |||| |||||| | ||| || || ||
Sbjct 977463 TCAACGTGGTCAGCGTAGACATGTGCATCGCCCATGACGTGCGTCAAGCTGCCAGGGACG 977404
Query 145750 AGGCC-CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808
||| | | || | |||| | ||||| |||||||| | |||||| || |||||||||||
Sbjct 977403 AGGTCACATGCGC-GGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGG 977345
Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC------ 145862
||| || || ||||| || | || |||||||||||||| ||| || | |||
Sbjct 977344 CACGCCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTTGG 977285
Query 145863 ----------------------------GCCCGCC--------ACGTAGAACTG-GCACA 145885
|| ||| ||||||||||| ||| |
Sbjct 977284 CTTCTCTCCGTCAGCGGGTGCACCGCGGGCTCGCGGGTAGGAGACGTAGAACTGCGCAAA 977225
Query 145886 GGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGA 145945
| |||||| ||||| |||||||| |||||||| |||||||| ||| ||||||
Sbjct 977224 C-ATGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGA 977166
Query 145946 CGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGT 146002
|| | | || ||| || ||| |||| | || || | || ||||||||
Sbjct 977165 GGA---TGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGGT 977109
Query 146003 CCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCC 146062
| |||||||| ||| |||||| ||||||| ||| || ||| |||| || ||||| | ||
Sbjct 977108 CGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCC 977049
Query 146063 ACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGG 146122
| ||||| |||||||| || || ||||| || || | |||| || || | | |
Sbjct 977048 ATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGT 976989
Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTC 146180
||||||| || || || |||||| ||||||||||||||||||| |||||| || | |
Sbjct 976988 CGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTG--C 976931
Query 146181 ATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAA 146240
|||| ||| ||| || |||||| |||||||| ||| ||| | | |||
Sbjct 976930 GAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTCAGCGATGACGGCGCGAAGGAA 976871
Query 146241 GACCCTCTTGGTGGTCAGCAGGGGGAAC 146268
||| | ||| || || || ||||| |||
Sbjct 976870 GACGCGCTTCGTAGTAAGGAGGGGCAAC 976843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590067211252000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |