Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq58 172 6e-38 seq511 134 1e-26 seq84 123 3e-23 seq1288 120 3e-22 >seq58 Length=215898 Score = 172 bits (190), Expect = 6e-38 Identities = 213/287 (74%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| ||||||| | |||||| Sbjct 120730 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACCTG 120789 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT----TGAACGACAACGAGCGCCATTTCATCA 116750 |||||||| | | | ||||||| | | | | ||||| | ||| | |||||| Sbjct 120790 TCCAAGGATCTCCA-CGACTGGAA-CAATAAGATCAACGAGGATGAGAAGTACTTCATCT 120847 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810 |||| | || ||||| |||||||| |||||||| ||||| ||||| ||||||||| Sbjct 120848 CGCACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGC 120907 Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 | ||| ||||| ||||| ||||||| || |||||||| ||||| || ||| | Sbjct 120908 GCTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATGA 120967 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||| | ||||| || | || ||| ||||||||||| ||| Sbjct 120968 TGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTAC 121014 Score = 161 bits (178), Expect = 1e-34 Identities = 312/455 (69%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040 |||||||||| ||||| ||| ||||| || |||| | || |||||| | |||| Sbjct 121139 AGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGAT-GAGAAGTCCTCCTTCGCCCAGCGT 121197 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || |||||||| ||||| ||||| ||||||| || |||||| |||| || Sbjct 121198 CTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTC 121257 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| || || || |||||||| ||||| ||| ||||||||| ||||| | Sbjct 121258 TGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGT 121317 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 || |||||||| || |||||| ||||| | || | | || | | | || || Sbjct 121318 GATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCACCTCAAGAACCGCCCC 121377 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | | | | ||| ||| || ||| || ||| || |||||| ||||| Sbjct 121378 AGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTG 121437 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 ||||| || ||||| |||| |||||| || | || | | | |||| ||| ||||| Sbjct 121438 ACCGAGGCTCTGCC-TTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACAT 121496 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||| || |||||| | || || | | || | | | |||| |||||| | | Sbjct 121497 TGAGTTTGTTGCCGACCGCCTCTTGGTTGCTCTCGGCAATGACAAGGTCTACAAGTCTTC 121556 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||| ||| | ||||||| ||| Sbjct 121557 CAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 121591 >seq511 Length=493796 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || |||||| | || || || | || Sbjct 427871 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 427812 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 427811 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 427752 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || ||||| || |||| ||||||||| |||||||||| Sbjct 427751 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 427692 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || | || ||||| || | || || Sbjct 427691 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGG 427645 >seq84 Length=81435 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| | || ||||| || |||| | | | | | ||||| Sbjct 61712 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 61771 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 ||| || | ||||| |||||||| ||| | |||||||| || || || | ||| || | Sbjct 61772 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 61831 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || |||| |||||||| |||||||||||||||||||||| |||| || | Sbjct 61832 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 61891 Query 40892 A 40892 | Sbjct 61892 A 61892 Score = 123 bits (136), Expect = 3e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40694 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA 40753 || || |||| || ||||| || ||||| ||||||||| | || || || | | || | Sbjct 61978 AACTAGTCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATA 62037 Query 40754 GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAAC 40813 | | | | ||||| ||| |||| |||||||||||||| ||| | |||||||| | Sbjct 62038 CCATCGACAATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGC 62097 Query 40814 GACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 40873 | | |||| ||| ||||| ||||| || |||| || ||||| ||| |||||||| | Sbjct 62098 GCTTGATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTC 62157 Query 40874 AGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| |||| || || | ||| |||| Sbjct 62158 AGAAGGAGTCCACCCTCCACTTGGTGCTGCG 62188 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || || ||| | || |||||| | | Sbjct 62202 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 62261 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| |||||||| || | ||||| Sbjct 62262 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 62320 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||| |||| || | |||||| | | || ||||| Sbjct 62321 GCAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAA 62380 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | ||||| ||||| || Sbjct 62381 CATCCAGAAGGAGTCGACGCTTCATCTTGT 62410 >seq1288 Length=383550 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 214144 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 214203 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | |||||||| || | Sbjct 214204 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 214263 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| ||||||||| ||||||||||||||||||| Sbjct 214264 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 214323 Query 40879 G 40879 | Sbjct 214324 G 214324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210827688000