Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq319 118 2e-21 seq25 93.3 9e-14 >seq319 Length=296375 Score = 118 bits (130), Expect = 2e-21 Identities = 378/581 (65%), Gaps = 13/581 (2%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || |||||| ||| || |||||||| |||| |||||||| | || || Sbjct 226760 TTCAAGACTTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAGACCC 226819 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || || || || || ||| | ||| |||| || Sbjct 226820 CAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTCATC 226879 Query 248953 GAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 || || |||| | ||| | | | | | | || || ||| | || || |||||||| Sbjct 226880 GAAACCTACAACCTGATGTCGAGCAAGTTCT-TCACTCACGCCTCTCCCACACTCTTCAA 226938 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 |||||||||| | |||||| ||| ||||| || | | |||| | || ||||| Sbjct 226939 CGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGACTC 226998 Query 249072 TGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCG 249130 | | || || || |||||||| || || || | || | ||| || || | || || | Sbjct 226999 TATTGAGGGTATCTATGACACCCTCAAGACTTGC-GCCATGATCTCCAAGATGGCCGGTG 227057 Query 249131 GAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATG 249190 | || |||||| |||| | |||||| || | || || || || || || || | Sbjct 227058 GCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAACG 227117 Query 249191 GGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCA 249250 | | | ||| |||| || | || || ||| | ||| || | | | || Sbjct 227118 GTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCG 227177 Query 249251 ACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACG 249304 |||||| || ||||| || | |||||||| || | || ||||||| Sbjct 227178 ACCAGGGTGGCAACAAGCGCC---CCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACG 227234 Query 249305 CCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGC 249364 ||||| | || || ||| |||| ||| |||||| ||||||| ||| | | || | Sbjct 227235 CCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCC 227294 Query 249365 GTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 ||||||| ||| || ||| ||| | ||||| | |||||| Sbjct 227295 GTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATG 227335 >seq25 Length=387149 Score = 93.3 bits (102), Expect = 9e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260 ||||||||| || ||| || | ||||| |||||||| || | ||||| |||||||| Sbjct 24193 CTGTCCGCCCTTTAAGATCATCATCCTCGACGAGGCCGATTCGATGACCCAGGACGCGCA 24252 Query 254261 GTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTG 254320 | ||||||||| || || |||||||| || | | || || || ||||| | || Sbjct 24253 GAGCGCCCTCCGTCGGACCATGGAGACATACAGCAAGATTACACGGTTCTGCCTCATCTG 24312 Query 254321 CAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||||||||| || ||||| | ||| || || || ||| ||||||||| |||| Sbjct 24313 CAACTACGTCACGCGCATCATTGACCCTCTTGCCAGCCGTTGCAGCAAGTTTCGCTTCA 24371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073748515078400