Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq319 484 6e-132 seq58 140 3e-28 seq84 136 4e-27 seq511 89.7 5e-13 >seq319 Length=296375 Score = 484 bits (536), Expect = 6e-132 Identities = 1221/1844 (66%), Gaps = 30/1844 (2%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || ||||||||||||||||| || | |||||| || ||||| || Sbjct 228543 GTGCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTG 228484 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || |||| | ||||| | |||| |||||| ||| ||||| Sbjct 228483 GTTATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATG 228424 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||| ||||| | | | |||||| ||| || ||||| || ||| Sbjct 228423 AAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTC 228364 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 |||||||| | ||| ||| || || ||| |||||| ||| ||||| | | Sbjct 228363 TTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTGGATGGAACCGTTCTCG 228304 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| || || || | |||| ||||| ||| ||| || | ||| || | Sbjct 228303 GCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAG 228244 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGA 22503 || | |||| || || || ||||| || | ||||| | || || ||||| |||||||| Sbjct 228243 AGCCAAGGGTTGACAACCTGGAACTCACCAG-CAAGAACACGACGCTGGTAGATGTTGGA 228185 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 ||| | || || || | || ||||| |||| ||||| | ||| || |||||||| Sbjct 228184 GGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCAT 228125 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATC 22621 ||||| | || || ||||| | | ||||||| ||| | ||| | ||||| Sbjct 228124 GGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATC 228065 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 ||||||||| ||||| || ||| | ||||| |||||| || || || | | ||| Sbjct 228064 --CCAGTCCCAGAGATCCGAGGGCTTGACATT---CCACATGTCATACTGGAGGATGCCC 228010 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAG 22741 || | ||| || |||||||| | ||| || || | | ||| || | ||| Sbjct 228009 TGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCAC 227951 Query 22742 CT-CGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GC 22797 | | | || ||| || || ||||||||||| |||||||| | ||| || Sbjct 227950 CGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGC 227891 Query 22798 GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAAC 22857 ||| || || || | |||||||| | || ||| || || || | |||||| || Sbjct 227890 CTCGG-GAGACT--CGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGAC 227834 Query 22858 GCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGAT 22913 || | |||||| || |||| || || || |||| ||| | | ||| | Sbjct 227833 ACCGAGACCGATGGGGCGGTGGCGCATGTTG----CTGTTGCGAGCCTCCTGAACAGGGT 227778 Query 22914 ACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNN 22973 | || ||||| ||||||||| ||| | | || | | || | Sbjct 227777 AGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGA 227718 Query 22974 NNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGG 23030 | |||||||| || ||| ||||| ||||||| || | ||||| ||||| Sbjct 227717 GCTTCTGGAAGTCGTAGACTCCCTCGTTGTAGTCAACAAAGGTGGGCAGGGCGAGCGAGG 227658 Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGAT 23090 | || ||||| || || ||||| || | |||||| | ||| || || || || | Sbjct 227657 CCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGT 227598 Query 23091 TGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGT 23150 || | || ||||| | || |||||||||| || || ||| | |||||||| Sbjct 227597 TGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGT 227538 Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCT 23210 |||||||| | || | || |||||| ||| | ||||| ||| || ||| | ||| Sbjct 227537 AGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCT 227478 Query 23211 GAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCA 23269 |||| | | ||| || ||| ||| | ||||||||| | |||||| || ||| Sbjct 227477 GAGCCTTCATG-GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCA 227419 Query 23270 AATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCAC 23329 || || | ||||| |||||||||||||| || ||| | || ||||||||| |||| Sbjct 227418 AACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAG 227359 Query 23330 ATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGT 23389 | || || || | |||| || || || || ||||| || ||| ||| || Sbjct 227358 TCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGG 227299 Query 23390 TCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACG 23449 || |||||||| |||||||| |||||| |||||| ||||||||| ||||| || || Sbjct 227298 TCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACA 227239 Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 || || ||||| ||||| ||||||| ||| || || || || | ||| ||||| ||||| Sbjct 227238 TCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGG 227179 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCG 23569 |||||||| || || ||||||||| | || | ||||| || |||| ||||||||| | Sbjct 227178 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTA 227119 Query 23570 CCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629 ||| ||| || | | || || | || || | | ||| |||| || ||| ||| Sbjct 227118 CCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATG 227059 Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689 || ||| || || || ||||| ||||| || || ||||| ||||| ||||| || Sbjct 227058 CCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCAATA 226999 Query 23690 CTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCC 23749 |||||| || | |||| | ||| || || |||| || || | || ||| |||| Sbjct 226998 GAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCG 226939 Query 23750 GAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCG 23809 ||| ||||| || |||||| || ||| | ||||||| || ||||| || ||| Sbjct 226938 TTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGTTTCG 226879 Query 23810 ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGA 23869 ||| || |||| ||| || || ||||| | |||||| ||||| ||||||| || Sbjct 226878 ATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGG 226819 Query 23870 GGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAAT 23929 ||||||||| | | ||||| || |||| || ||||| | | || || || || Sbjct 226818 GGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGAAG 226759 Query 23930 CCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || | ||||| ||||| || || | || ||||| || Sbjct 226758 CCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGA 226715 >seq58 Length=215898 Score = 140 bits (154), Expect = 3e-28 Identities = 268/390 (69%), Gaps = 10/390 (3%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | | || ||||| | | | | || | |||||| || | Sbjct 121137 CAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCG 121196 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 || | || ||||||||||| || ||||| ||||| || ||| || | || || Sbjct 121197 TCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTT 121256 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| || || || |||||||| ||||| || ||||||| |||| || || Sbjct 121257 CTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCG 121316 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 || |||||||| || || || || || ||||| | ||||||||| |||| |||| Sbjct 121317 TGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCAC---CTCAA-GAACC 121372 Query 58154 GACGCGGGATCGCA--TCTT---GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | | | | | ||| || | |||||| ||| ||| || ||| ||| || | ||| Sbjct 121373 GCCCCAGCA-AGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAGATTGAGCAGGAG 121431 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | ||||| || || || || ||||||| |||||| | ||||| || Sbjct 121432 TTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 121491 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTG 58298 ||||||||||||||||||||| | || ||| Sbjct 121492 TACATTGAGTTTGTTGCCGACCGCCTCTTG 121521 >seq84 Length=81435 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || ||| | || || ||| |||| Sbjct 62202 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 62261 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || ||||||||| Sbjct 62262 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 62321 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || |||||||| || | || |||| ||||| ||| Sbjct 62322 CAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAAC 62381 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| |||||||| || ||| | ||| | || ||| Sbjct 62382 ATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGGT 62429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || |||||| | || ||||| | || || | ||| Sbjct 61984 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 62043 Query 31263 AAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | ||||| || ||| | |||||| || ||| | || || ||||||||||| | Sbjct 62044 ACAATGTCAAGTCAAAGATTCA-GGACAAAGAGGGCATTCCCCCTGACCAGCAGCGCTTG 62102 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||| ||||| ||| | || ||| ||| || |||||| |||||||| || Sbjct 62103 ATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAG 62162 Query 31382 GAATCGACTCTTCATCTGGTACT 31404 || || || || || |||| || Sbjct 62163 GAGTCCACCCTCCACTTGGTGCT 62185 >seq511 Length=493796 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 427876 CAATCATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGT 427817 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | || || | Sbjct 427816 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTG 427757 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || || ||||| || ||| | || ||| || | ||| | Sbjct 427756 ACCAGCAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 427697 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || ||||| |||| || | ||| | || |||| Sbjct 427696 ACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGGTA 427643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759156296000