Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq319 484 6e-132
seq58 140 3e-28
seq84 136 4e-27
seq511 89.7 5e-13
>seq319
Length=296375
Score = 484 bits (536), Expect = 6e-132
Identities = 1221/1844 (66%), Gaps = 30/1844 (2%)
Strand=Plus/Minus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
||||| || || ||||||||||||||||| || | |||||| || ||||| ||
Sbjct 228543 GTGCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTG 228484
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || |||| | ||||| | |||| |||||| ||| |||||
Sbjct 228483 GTTATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATG 228424
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324
|| || || || ||||| ||||| | | | |||||| ||| || ||||| || |||
Sbjct 228423 AAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTC 228364
Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384
|||||||| | ||| ||| || || ||| |||||| ||| ||||| | |
Sbjct 228363 TTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTGGATGGAACCGTTCTCG 228304
Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444
||||| || || || | |||| ||||| ||| ||| || | ||| || |
Sbjct 228303 GCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAG 228244
Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGA 22503
|| | |||| || || || ||||| || | ||||| | || || ||||| ||||||||
Sbjct 228243 AGCCAAGGGTTGACAACCTGGAACTCACCAG-CAAGAACACGACGCTGGTAGATGTTGGA 228185
Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563
||| | || || || | || ||||| |||| ||||| | ||| || ||||||||
Sbjct 228184 GGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCAT 228125
Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATC 22621
||||| | || || ||||| | | ||||||| ||| | ||| | |||||
Sbjct 228124 GGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATC 228065
Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681
||||||||| ||||| || ||| | ||||| |||||| || || || | | |||
Sbjct 228064 --CCAGTCCCAGAGATCCGAGGGCTTGACATT---CCACATGTCATACTGGAGGATGCCC 228010
Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAG 22741
|| | ||| || |||||||| | ||| || || | | ||| || | |||
Sbjct 228009 TGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCAC 227951
Query 22742 CT-CGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GC 22797
| | | || ||| || || ||||||||||| |||||||| | ||| ||
Sbjct 227950 CGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGC 227891
Query 22798 GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAAC 22857
||| || || || | |||||||| | || ||| || || || | |||||| ||
Sbjct 227890 CTCGG-GAGACT--CGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGAC 227834
Query 22858 GCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGAT 22913
|| | |||||| || |||| || || || |||| ||| | | ||| |
Sbjct 227833 ACCGAGACCGATGGGGCGGTGGCGCATGTTG----CTGTTGCGAGCCTCCTGAACAGGGT 227778
Query 22914 ACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNN 22973
| || ||||| ||||||||| ||| | | || | | || |
Sbjct 227777 AGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGA 227718
Query 22974 NNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGG 23030
| |||||||| || ||| ||||| ||||||| || | ||||| |||||
Sbjct 227717 GCTTCTGGAAGTCGTAGACTCCCTCGTTGTAGTCAACAAAGGTGGGCAGGGCGAGCGAGG 227658
Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGAT 23090
| || ||||| || || ||||| || | |||||| | ||| || || || || |
Sbjct 227657 CCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGT 227598
Query 23091 TGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGT 23150
|| | || ||||| | || |||||||||| || || ||| | ||||||||
Sbjct 227597 TGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGT 227538
Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCT 23210
|||||||| | || | || |||||| ||| | ||||| ||| || ||| | |||
Sbjct 227537 AGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCT 227478
Query 23211 GAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCA 23269
|||| | | ||| || ||| ||| | ||||||||| | |||||| || |||
Sbjct 227477 GAGCCTTCATG-GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCA 227419
Query 23270 AATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCAC 23329
|| || | ||||| |||||||||||||| || ||| | || ||||||||| ||||
Sbjct 227418 AACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAG 227359
Query 23330 ATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGT 23389
| || || || | |||| || || || || ||||| || ||| ||| ||
Sbjct 227358 TCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGG 227299
Query 23390 TCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACG 23449
|| |||||||| |||||||| |||||| |||||| ||||||||| ||||| || ||
Sbjct 227298 TCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACA 227239
Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509
|| || ||||| ||||| ||||||| ||| || || || || | ||| ||||| |||||
Sbjct 227238 TCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGG 227179
Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCG 23569
|||||||| || || ||||||||| | || | ||||| || |||| ||||||||| |
Sbjct 227178 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTA 227119
Query 23570 CCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629
||| ||| || | | || || | || || | | ||| |||| || ||| |||
Sbjct 227118 CCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATG 227059
Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689
|| ||| || || || ||||| ||||| || || ||||| ||||| ||||| ||
Sbjct 227058 CCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCAATA 226999
Query 23690 CTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCC 23749
|||||| || | |||| | ||| || || |||| || || | || ||| ||||
Sbjct 226998 GAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCG 226939
Query 23750 GAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCG 23809
||| ||||| || |||||| || ||| | ||||||| || ||||| || |||
Sbjct 226938 TTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGTTTCG 226879
Query 23810 ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGA 23869
||| || |||| ||| || || ||||| | |||||| ||||| ||||||| ||
Sbjct 226878 ATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGG 226819
Query 23870 GGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAAT 23929
||||||||| | | ||||| || |||| || ||||| | | || || || ||
Sbjct 226818 GGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGAAG 226759
Query 23930 CCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| || || | ||||| ||||| || || | || ||||| ||
Sbjct 226758 CCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGA 226715
>seq58
Length=215898
Score = 140 bits (154), Expect = 3e-28
Identities = 268/390 (69%), Gaps = 10/390 (3%)
Strand=Plus/Plus
Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973
||||||||| || ||| | | || ||||| | | | | || | |||||| || |
Sbjct 121137 CAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCG 121196
Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033
|| | || ||||||||||| || ||||| ||||| || ||| || | || ||
Sbjct 121197 TCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTT 121256
Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093
||| | ||||| || || || |||||||| ||||| || ||||||| |||| || ||
Sbjct 121257 CTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCG 121316
Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153
|| |||||||| || || || || || ||||| | ||||||||| |||| ||||
Sbjct 121317 TGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCAC---CTCAA-GAACC 121372
Query 58154 GACGCGGGATCGCA--TCTT---GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208
| | | | | ||| || | |||||| ||| ||| || ||| ||| || | |||
Sbjct 121373 GCCCCAGCA-AGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAGATTGAGCAGGAG 121431
Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268
|| | ||||| || || || || ||||||| |||||| | ||||| ||
Sbjct 121432 TTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 121491
Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTG 58298
||||||||||||||||||||| | || |||
Sbjct 121492 TACATTGAGTTTGTTGCCGACCGCCTCTTG 121521
>seq84
Length=81435
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || ||||| || || ||| | || || ||| ||||
Sbjct 62202 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 62261
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || || ||||||||| ||| | || |||||||||
Sbjct 62262 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 62321
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || || ||||| || |||||||| || | || |||| ||||| |||
Sbjct 62322 CAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAAC 62381
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || || || ||||| |||||||| || ||| | ||| | || |||
Sbjct 62382 ATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGGT 62429
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/203 (70%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| ||||| || || ||||| || |||||| | || ||||| | || || | |||
Sbjct 61984 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 62043
Query 31263 AAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321
| | ||||| || ||| | |||||| || ||| | || || ||||||||||| |
Sbjct 62044 ACAATGTCAAGTCAAAGATTCA-GGACAAAGAGGGCATTCCCCCTGACCAGCAGCGCTTG 62102
Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381
|| ||||| ||||| ||| | || ||| ||| || |||||| |||||||| ||
Sbjct 62103 ATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAG 62162
Query 31382 GAATCGACTCTTCATCTGGTACT 31404
|| || || || || |||| ||
Sbjct 62163 GAGTCCACCCTCCACTTGGTGCT 62185
>seq511
Length=493796
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| || || || || || |||||| | || || ||
Sbjct 427876 CAATCATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGT 427817
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | ||||| | || ||||||||| ||| | || || |
Sbjct 427816 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTG 427757
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || || ||||| || ||| | || ||| || | ||| |
Sbjct 427756 ACCAGCAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 427697
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || || || || ||||| |||| || | ||| | || ||||
Sbjct 427696 ACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGGTA 427643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445759156296000
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