Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq511 100 3e-16
seq84 91.5 1e-13
>seq511
Length=493796
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || ||||||| || ||||| || || ||||| || ||| | |||| |
Sbjct 427657 CGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 427716
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| |||||||| || |||||| ||||||| || ||||| || || || ||||| || |||
Sbjct 427717 TCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 427776
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||||| | ||||||||||| ||| |
Sbjct 427777 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 427836
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || || | || || ||||| || |||||
Sbjct 427837 GTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 427871
>seq84
Length=81435
Score = 91.5 bits (100), Expect = 1e-13
Identities = 156/224 (70%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||| || ||||| | || ||||| || |||||||| |||||| |
Sbjct 62200 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 62141
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||| || ||||| || || || |||||| || ||||| || || ||
Sbjct 62140 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 62081
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716
||||| |||||||| ||| | |||| || | | || | || || | | ||| ||
Sbjct 62080 ATGCCCTCTTTGTCC-TGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAAC 62022
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTT 139760
||||| ||| | ||||||||||| | ||| || |||| || ||
Sbjct 62021 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGACTAGTT 61978
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
||| ||||||| || ||||| || || ||||| || ||| || |||| ||| ||
Sbjct 61899 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTC 61840
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
||||| || || || | ||||| || ||||| || || || ||||| || |||||
Sbjct 61839 AAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 61780
Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
||| ||| || | | || | || |||| || ||| ||||||| ||| | |||||
Sbjct 61779 GATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTT 61720
Query 139735 GCCGGT 139740
||||||
Sbjct 61719 GCCGGT 61714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496055938960000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |