Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq319 95.1 2e-14
seq58 87.8 2e-12
>seq319
Length=296375
Score = 95.1 bits (104), Expect = 2e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | || ||||||||||||| | || || | ||| || || |||||||||
Sbjct 228585 TCCTGGTCGACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATG 228526
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908
|| || || || ||||| |||| ||| |||||||| || |||| ||| | |
Sbjct 228525 CCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTC 228466
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
|| || |||||||| || | |||||| || ||||||||||| || | ||| |||
Sbjct 228465 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCA 228406
Query 70969 GCCAT 70973
|||||
Sbjct 228405 GCCAT 228401
>seq58
Length=215898
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| ||||| ||| ||| ||||||||||| | | || | |||||||| || || ||
Sbjct 121346 CAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGA 121287
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|||||||| || |||||||| || ||||| || || || || || | || ||||||
Sbjct 121286 CCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAG 121227
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT---GT 42241
|| || || || || || ||||||| || | || | | || | ||||
Sbjct 121226 ATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCGCTA 121167
Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTT 42270
|||||||| | ||||| |||||||||||
Sbjct 121166 ATCCACTTCAGGGCCCAGTCGGCCTTCTT 121138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671128293988000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |