Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq25 105 6e-18 >seq25 Length=387149 Score = 105 bits (116), Expect = 6e-18 Identities = 176/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||||||| ||||| ||||| ||||| | | | || || || ||| ||||| Sbjct 216269 ACGCCCGTGCTGCCGAAGCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCCGCGACCTCG 216210 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | | |||||| | || ||||||| || ||||| || | ||||| ||| Sbjct 216209 ACGATCTCGGGGGT-GAAGATGCGCTCGACGACGAGCTGGGCGACGCGGTCACCCTCGGC 216151 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 |||||||| ||| || | || |||||| || | || || | |||||||||||| Sbjct 216150 GACCTCGAAGTCGGCGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTC 216091 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||||| || || || |||||| ||||||||||| |||| | || || ||||||||||| Sbjct 216090 AGCGTCGATGACACCGGCGCCCGTGTCGATGAAGTTCTTGGCAGCGAGACCGGAGCGGGG 216031 Query 5740 AGCCACGCGGCC 5751 || | |||||| Sbjct 216030 GGCAATGCGGCC 216019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430047586325600