Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq319 370 3e-97
seq58 91.5 4e-13
>seq319
Length=296375
Score = 370 bits (410), Expect = 3e-97
Identities = 1127/1722 (65%), Gaps = 32/1722 (2%)
Strand=Plus/Plus
Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513
|| ||||| ||| | |||||||| || |||||||| | || ||||| ||
Sbjct 226817 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 226876
Query 363514 ATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACAATGTA 363572
|| ||||| || || || | | || || | ||||| |||||| | || ||| | |
Sbjct 226877 ATCGAAACCTACAACCTGATGTCGAGCAAGT-TCTTCACTCACGCCTCTCCCACACTCTT 226935
Query 363573 CAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGA 363632
||| || || || | | | | ||| |||| |||||||| || | | |||||||| ||
Sbjct 226936 CAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGA 226995
Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692
|| || |||||||||| |||||| || |||| ||| || | || ||||||| || ||
Sbjct 226996 CTCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGG 227055
Query 363693 CGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACA 363750
|| |||||| | | || ||||| | || || || | | || ||| ||||||
Sbjct 227056 TGGCATTGGTCTCAACG-TCCACCGCATCCGCGCCACCGG-CTCATATATTGCCGGCACG 227113
Query 363751 GGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810
|| ||| || || | || || ||||| ||||| || |||| ||||| | |||
Sbjct 227114 AACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTAC 227173
Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCAT 363870
|||||||||||||| |||||| || || || || || || || |||||| ||
Sbjct 227174 GTCGACCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCAC 227233
Query 363871 GCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCA 363930
|||||| | || || || | || | || || ||| || || ||||| | || ||
Sbjct 227234 GCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCC 227293
Query 363931 CGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGT 363990
||||| || ||| || || ||| || | |||| || |||||| | |||||| |
Sbjct 227294 CGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAAT 227353
Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050
| | ||| | ||| | ||||| ||||||| || || || |||| | || ||
Sbjct 227354 GGGGACTGGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAG 227413
Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110
|| | || || | ||||| ||||| || | ||| |||| ||| ||||| ||
Sbjct 227414 GAGTTTGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCATGAAG 227473
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| |||||||| |||| ||||||| | || | |||| ||||| || | |||| |||
Sbjct 227474 GCTCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATG 227533
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||| ||| | |||||||||| ||||||| || ||||||| || | || ||||
Sbjct 227534 CTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTA-TCCGCAG 227592
Query 364231 -AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289
|||||| || || |||||||| || ||| ||| || || ||| || || || ||
Sbjct 227593 CTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTGCAA 227652
Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTTTTGACCACCA 364343
||| || ||| |||| || || | ||||| || || || | ||| |||
Sbjct 227653 CCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTCTACGACTTCCA 227712
Query 364344 GCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAG 364401
| | || | || || ||| | || | | | |||| || ||| | ||||||
Sbjct 227713 GAAGCTCCACGAGGTCACCCAGGTCGTTGTCC--GCAACCTGAACAGAATCATCGACGTC 227770
Query 364402 AATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCCCGATTG 364456
|| | || || ||| || || || ||| || ||||| || ||||| || |
Sbjct 227771 AACCACTACCCTGTTCAGGAGGCTCGCAACAGC-----AACATGCGCCACCGCCCCATCG 227825
Query 364457 GTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGC 364516
|||| ||||| ||||| || ||||| | || || ||| ||| | || || || |
Sbjct 227826 GTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGCCCTTCGAGTCTC 227885
Query 364517 CTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTG 364576
| || ||||| | || || ||| ||||||| || || || || || || | ||
Sbjct 227886 CCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCACCA 227945
Query 364577 CTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635
||| ||| | |||| || |||| ||| || || ||||| |||||| ||
Sbjct 227946 TGTCG-GTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTGTT 228004
Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGG 364695
|| ||||| | |||||| ||| | |||||||||| ||| || | | ||| |||||
Sbjct 228005 TCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTGG 228064
Query 364696 GATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCC 364754
||| | | | | | | ||||| |||| ||| |||||||| || | |||||
Sbjct 228065 GATGCTTTGAAGGAGC-AGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCC 228123
Query 364755 CATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTAC 364814
|||||| || || || | |||||| | || |||||||||||||| || || | ||
Sbjct 228124 CATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACAC 228183
Query 364815 AAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCT 364874
||| | || || || |||||| | || || || | ||| || || | ||
Sbjct 228184 CTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGCT 228243
Query 364875 AGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGC 364934
| |||||||| |||| || |||||| || |||||||||| ||||| ||
Sbjct 228244 CTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCATCATTGC 228303
Query 364935 CGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAA 364994
|| || ||||| | |||||||| || |||| || | ||| | | |||||
Sbjct 228304 CGAGAACGGTTCCATCCAGAACATCCCCAACATTCCTACTGAGGTCAAGGCCCTGTACAA 228363
Query 364995 AACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTT 365054
|| || ||||| || || ||| ||| | | | ||||| ||||| || ||||| ||
Sbjct 228364 GACTGTTTGGGAGATCTCGCAGCGTACTGTTGTGCAGATGGCTGCCGACCGTGGTGCCTT 228423
Query 365055 TATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTAC 365114
||| ||| |||||| | ||| | ||||| | || ||| | |||| | ||
Sbjct 228424 CATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGGCAAGATAAC 228483
Query 365115 ATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
|||||||||| ||| ||||| ||| || ||||| ||
Sbjct 228484 CAGCATGCATTTCGCCGGCTGGAAGCTCGGCCTGAAGACGGG 228525
>seq58
Length=215898
Score = 91.5 bits (100), Expect = 4e-13
Identities = 147/209 (70%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-ACGT--TCATTCGCGGAACGT 22494
|| ||||| || ||||| ||||| ||||| | | |||| | || || ||||| | |||
Sbjct 121138 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCGT 121197
Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554
|| |||| || || | ||||| || || ||||| || || || | |||||
Sbjct 121198 CTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTC 121257
Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614
||||| || || |||| ||||||| ||||| || || || || ||| | || ||
Sbjct 121258 TGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGT 121317
Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643
|||||||||||||| ||||| || || ||
Sbjct 121318 GATGAGGGTCTTCACACCGACTTCGCCTG 121346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303331891016600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |