Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq84 143 3e-29 seq511 129 6e-25 seq1288 113 4e-20 seq58 86.0 6e-12 >seq84 Length=81435 Score = 143 bits (158), Expect = 3e-29 Identities = 164/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||||||| || || | ||| |||||||| ||||||||||||||| | Sbjct 62200 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 62141 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||||||| |||| || ||||||||||| || || Sbjct 62140 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 62081 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| ||| | | || ||||| | || | ||||| | ||||| | Sbjct 62080 ATGCCCTCTTTGTC-CTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAAC 62022 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | ||| | ||| || ||||| || || || |||| Sbjct 62021 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 61984 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || | ||| | ||||||||||| || ||||||||||| ||| Sbjct 62428 CCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTC 62369 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| | |||||| || || |||| | |||||||||||| ||||| Sbjct 62368 AAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGA 62309 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | || |||| Sbjct 62308 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACC 62249 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || || || || ||||| |||||||| Sbjct 62248 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | ||| |||||||| || |||||||| ||| | Sbjct 61916 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 61857 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| | || | ||||||||||| || || Sbjct 61856 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 61797 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||||| |||||||| Sbjct 61796 ATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACC 61737 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||| | ||| || ||||| Sbjct 61736 TCAAGGGTGATGGTCTTGCCGGT 61714 >seq511 Length=493796 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || || || | ||| |||||||| || |||||||| ||| Sbjct 427645 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 427704 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | ||||||||||| || ||| Sbjct 427705 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 427764 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 427765 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 427824 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || ||||| ||||| || || ||||| |||||||||| Sbjct 427825 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGA 427873 >seq1288 Length=383550 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| |||||| ||||||||||| ||| ||| Sbjct 214324 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 214265 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || ||||| || || ||||| ||| || ||||| | | Sbjct 214264 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 214205 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| || | ||||| ||| ||||| || || || || |||| Sbjct 214204 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 214145 Query 131225 AA 131226 || Sbjct 214144 AA 214143 >seq58 Length=215898 Score = 86.0 bits (94), Expect = 6e-12 Identities = 343/520 (66%), Gaps = 25/520 (5%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC-AGCAGCACCGCGAC 46145 || ||| | |||||||| |||||||||| |||||||||| | | | || | | | Sbjct 121126 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCC 121185 Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205 || |||| ||||| | || ||||| || || ||||| |||| || || || Sbjct 121186 TT-CGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT 121244 Query 46206 TGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264 ||| ||||||| | |||| || | || | | |||||||| ||||| || ||||| Sbjct 121245 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTT-ATGCCCGGTCTGACCTTCTCCAACG 121303 Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTC 46324 ||||||| || || || ||||| || || || ||||| || || ||| || || ||| Sbjct 121304 AGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCT---ACTCTC 121360 Query 46325 GCGTGCACGACAAGCTTGCGCCCGACACC--GT-GCTGAG--CATGTTCAAGGAGGCGGT 46379 | | | | || | || || | | | || |||| ||| || || || || Sbjct 121361 AC---CTCAAGAACC--GCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGT 121415 Query 46380 GGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC 46439 |||||| ||||||| | || | || ||||| || ||||| ||||||||| | Sbjct 121416 CAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTC 121475 Query 46440 ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACC 46498 | ||| | ||||| |||||||| || ||||| || || | | ||| || | Sbjct 121476 CAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCT-CTTG-GTTGCTCTCGGC 121533 Query 46499 A--GCCGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGG 46555 | | | ||| | | || | | ||| || ||||| || ||| | ||||||||||||| Sbjct 121534 AATGAC-AAG-GTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 121591 Query 46556 AGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||| || || || || || ||||| || | ||| || Sbjct 121592 GCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 121631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005129792000