Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq84 143 3e-29
seq511 129 6e-25
seq1288 113 4e-20
seq58 86.0 6e-12
>seq84
Length=81435
Score = 143 bits (158), Expect = 3e-29
Identities = 164/218 (75%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||||||||| || || | ||| |||||||| ||||||||||||||| |
Sbjct 62200 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 62141
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||||||| |||| || ||||||||||| || ||
Sbjct 62140 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 62081
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| || |||||||| ||| | | || ||||| | || | ||||| | ||||| |
Sbjct 62080 ATGCCCTCTTTGTC-CTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAAC 62022
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|| | ||| | ||| || ||||| || || || ||||
Sbjct 62021 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 61984
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || |||| ||| || || | ||| | ||||||||||| || ||||||||||| |||
Sbjct 62428 CCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTC 62369
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| | |||||| || || |||| | |||||||||||| |||||
Sbjct 62368 AAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGA 62309
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||||| | || | || || | || ||||
Sbjct 62308 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACC 62249
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||||| || || || || || || || ||||| ||||||||
Sbjct 62248 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || || || | ||| |||||||| || |||||||| ||| |
Sbjct 61916 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 61857
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| |||||||| || ||| | || | ||||||||||| || ||
Sbjct 61856 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 61797
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | ||||||| ||||||||
Sbjct 61796 ATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACC 61737
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|| | ||| | ||| || |||||
Sbjct 61736 TCAAGGGTGATGGTCTTGCCGGT 61714
>seq511
Length=493796
Score = 129 bits (142), Expect = 6e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| || || || | ||| |||||||| || |||||||| |||
Sbjct 427645 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 427704
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| |||||||| || || |||| | ||||||||||| || |||
Sbjct 427705 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 427764
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 427765 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 427824
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
|| | ||| | || ||||| ||||| || || ||||| ||||||||||
Sbjct 427825 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGA 427873
>seq1288
Length=383550
Score = 113 bits (124), Expect = 4e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | |||||| |||||| ||||||||||| ||| |||
Sbjct 214324 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 214265
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || ||||||||||| || ||||| || || ||||| ||| || ||||| | |
Sbjct 214264 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 214205
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || || | |||||||| || | ||||| ||| ||||| || || || || ||||
Sbjct 214204 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 214145
Query 131225 AA 131226
||
Sbjct 214144 AA 214143
>seq58
Length=215898
Score = 86.0 bits (94), Expect = 6e-12
Identities = 343/520 (66%), Gaps = 25/520 (5%)
Strand=Plus/Plus
Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC-AGCAGCACCGCGAC 46145
|| ||| | |||||||| |||||||||| |||||||||| | | | || | | |
Sbjct 121126 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCC 121185
Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205
|| |||| ||||| | || ||||| || || ||||| |||| || || ||
Sbjct 121186 TT-CGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT 121244
Query 46206 TGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264
||| ||||||| | |||| || | || | | |||||||| ||||| || |||||
Sbjct 121245 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTT-ATGCCCGGTCTGACCTTCTCCAACG 121303
Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTC 46324
||||||| || || || ||||| || || || ||||| || || ||| || || |||
Sbjct 121304 AGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCT---ACTCTC 121360
Query 46325 GCGTGCACGACAAGCTTGCGCCCGACACC--GT-GCTGAG--CATGTTCAAGGAGGCGGT 46379
| | | | || | || || | | | || |||| ||| || || || ||
Sbjct 121361 AC---CTCAAGAACC--GCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGT 121415
Query 46380 GGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC 46439
|||||| ||||||| | || | || ||||| || ||||| ||||||||| |
Sbjct 121416 CAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTC 121475
Query 46440 ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACC 46498
| ||| | ||||| |||||||| || ||||| || || | | ||| || |
Sbjct 121476 CAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCT-CTTG-GTTGCTCTCGGC 121533
Query 46499 A--GCCGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGG 46555
| | | ||| | | || | | ||| || ||||| || ||| | |||||||||||||
Sbjct 121534 AATGAC-AAG-GTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 121591
Query 46556 AGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
||||| || || || || || ||||| || | ||| ||
Sbjct 121592 GCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 121631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472005129792000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |