Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq58 114 3e-20
seq497 113 9e-20
seq319 107 4e-18
seq604 100 6e-16
seq174 87.8 4e-12
>seq58
Length=215898
Score = 114 bits (126), Expect = 3e-20
Identities = 272/406 (67%), Gaps = 10/406 (2%)
Strand=Plus/Minus
Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582
||||| ||||| || | | || || || | ||||| || ||||| || | ||||||
Sbjct 121652 TTCATGACACC-GGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCC 121594
Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642
|||| ||||| |||||||||||| |||||||| | | ||||| |||| ||
Sbjct 121593 GCCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATT 121534
Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702
||| || || || |||| |||||| || |||||||| | ||||| |||||| | ||
Sbjct 121533 GCCGAGAGCAACCAAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGA 121474
Query 251703 GTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762
||||||||| | || | ||||| | ||||| | ||| |||| || | ||
Sbjct 121473 GTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGAC 121414
Query 251763 TGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818
|| || | | || ||| | ||||| | | | | | ||||| || | |
Sbjct 121413 AGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGTGAG 121358
Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878
|||| ||||| | | || | ||| |||||||| || ||| ||| | ||||||||
Sbjct 121357 AGTAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGG 121298
Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGAT 251924
| | ||| || ||||| | ||||| ||| |||||||||||||
Sbjct 121297 AGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGAT 121252
>seq497
Length=853749
Score = 113 bits (124), Expect = 9e-20
Identities = 440/678 (65%), Gaps = 23/678 (3%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || |||||||| ||||| |||||||||||| |||| || | || ||||| || |
Sbjct 169840 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGTTGGCTCTGGCCCGTGCCATGCTCAAG 169781
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
| ||||| ||||| ||||| || || || ||||||||| ||||| ||||| | |||
Sbjct 169780 GGCGCCGACGTCCTGCTGCTCGACGAACCTACCAACCACTTGGACGTTGCCAACATTGCC 169721
Query 279816 TGGCTAGTGTCCTACCT----AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871
||||| | | ||||||| | ||| | | ||| || | | || || |||||
Sbjct 169720 TGGCTCGAGACCTACCTCAAGACCCACCCCG-AGA---TTACCAGTTTGATCGTTTCTCA 169665
Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931
||||||||||||||| || ||| | | |||| ||||| |||| || |||
Sbjct 169664 CGACTCTGGCTTCCTCGACAACGTCACTACCGACATCTACCACTACGAGCCCAACAAGAA 169605
Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCC 279989
||| | ||| ||||||||| | || || ||| ||||| |||||
Sbjct 169604 GCTGGCGTGCTACAAGGGCAACCTGGCCAACTT--TGTCAAGCTCCGCCCCGAGGCCAAG 169547
Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049
|||||| || || || | | ||| | ||||| | || |||| |||
Sbjct 169546 AGCTACTACACGCTCTCGGCTTCCCAGGTCCAGTTCAAGTTCCC-GCCCCCGGGTATCTT 169488
Query 280050 GA-GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCT 280106
|| || ||| || | || || ||||| | | || ||||||||
Sbjct 169487 GACCGGTGTCAAGTCTCTGACCCGTGCCATCATCCGCATGACC--AACGTCTCCTACCAA 169430
Query 280107 TATCCCAATGGCCCCAA-CAT--CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCA 280163
|| ||||| | ||||| | | | | ||| |||| || ||| || || || ||
Sbjct 169429 TACCCCAAGGCTCCCAAGCCTTCCCTGAGCGAGGTCACCTGCCAGCTTACTCTGTCGTCC 169370
Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223
| | | |||| || ||||| ||||| || ||||||||||| ||||| |||| |||
Sbjct 169369 AGAGTAGCCATCATCGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAAGATCCTTACT 169310
Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTA 280282
|| ||| |||| | ||| | | | |||||| |||||| |||| || | |||
Sbjct 169309 GGTGAGGTTATTCCCAC-CACCGGTAAGGTAGAGAAGCACCCCAACCTGCGTATCGGTTA 169251
Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342
| || ||||||||| || | ||| | |||| || || || | ||| || ||||| ||
Sbjct 169250 CATCAAGCAGCACGCTCTCGAGCACGTTGAGATGCATCTCGAGAAGACACCCAACCAGTA 169191
Query 280343 CATTCAGTGGCGCTATGC 280360
| | |||||||| || ||
Sbjct 169190 CCTCCAGTGGCGTTACGC 169173
>seq319
Length=296375
Score = 107 bits (118), Expect = 4e-18
Identities = 186/268 (69%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||||| ||| |||| ||||||||||| || ||||| | | | || || | ||
Sbjct 228439 CTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGA 228380
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
||||||||| |||||||||| |||||||| |||| | ||||| | |||||
Sbjct 228379 GATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTG 228320
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293
||| || || | |||||| || |||||||||| | |||||||| || |||| |
Sbjct 228319 GATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATG-T 228261
Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353
| | ||| || | || ||| ||||||||| ||||||||||||| ||| ||||
Sbjct 228260 CGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGAC 228201
Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTC 293381
| ||| ||||| || ||| ||| ||
Sbjct 228200 GCTGGTAGATGTTGGAGGTGTAGGGCTC 228173
>seq604
Length=803295
Score = 100 bits (110), Expect = 6e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| || || |||| ||||| || || || |||| ||||| ||||| |||
Sbjct 189212 GGCGAGGACCTTTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATCCTGCTCAAC 189153
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| ||||||||||| | || || ||||| ||||||||| || |
Sbjct 189152 CAGACTCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 189093
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 189092 GGCAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 189034
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 189033 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 188992
Score = 96.9 bits (106), Expect = 7e-15
Identities = 114/152 (75%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | || |||||| ||||||| | ||||| ||||| |||||||| || || |
Sbjct 187840 CCAACTTCGGCCTGGACGCCGAGTTGGTTTCCCACTCCCGCATGCGCGGTCTGTCCGGTG 187781
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
| ||| ||||| | ||| | | || ||||| ||||||| |||||| |||||||
Sbjct 187780 GTCAGCGTGTCAAGGTCGTCCTTGCTGCCTGCTCT-TGGCAACGTCCTCACTTGATCGTC 187722
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| ||||||||||||||||| || ||||| ||
Sbjct 187721 CTTGACGAGCCTACCAACTACCTCGACCGTGA 187690
>seq174
Length=323381
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 25537 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 25478
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 25477 CCCACGTCGGGCTCAATTC-CCGTC 25454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027819680093300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |