Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq58 114 3e-20 seq497 113 9e-20 seq319 107 4e-18 seq604 100 6e-16 seq174 87.8 4e-12 >seq58 Length=215898 Score = 114 bits (126), Expect = 3e-20 Identities = 272/406 (67%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582 ||||| ||||| || | | || || || | ||||| || ||||| || | |||||| Sbjct 121652 TTCATGACACC-GGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCC 121594 Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642 |||| ||||| |||||||||||| |||||||| | | ||||| |||| || Sbjct 121593 GCCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATT 121534 Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702 ||| || || || |||| |||||| || |||||||| | ||||| |||||| | || Sbjct 121533 GCCGAGAGCAACCAAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGA 121474 Query 251703 GTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762 ||||||||| | || | ||||| | ||||| | ||| |||| || | || Sbjct 121473 GTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGAC 121414 Query 251763 TGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818 || || | | || ||| | ||||| | | | | | ||||| || | | Sbjct 121413 AGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGTGAG 121358 Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878 |||| ||||| | | || | ||| |||||||| || ||| ||| | |||||||| Sbjct 121357 AGTAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGG 121298 Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGAT 251924 | | ||| || ||||| | ||||| ||| ||||||||||||| Sbjct 121297 AGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGAT 121252 >seq497 Length=853749 Score = 113 bits (124), Expect = 9e-20 Identities = 440/678 (65%), Gaps = 23/678 (3%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| ||||| |||||||||||| |||| || | || ||||| || | Sbjct 169840 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGTTGGCTCTGGCCCGTGCCATGCTCAAG 169781 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||| ||||| ||||| || || || ||||||||| ||||| ||||| | ||| Sbjct 169780 GGCGCCGACGTCCTGCTGCTCGACGAACCTACCAACCACTTGGACGTTGCCAACATTGCC 169721 Query 279816 TGGCTAGTGTCCTACCT----AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| | | ||||||| | ||| | | ||| || | | || || ||||| Sbjct 169720 TGGCTCGAGACCTACCTCAAGACCCACCCCG-AGA---TTACCAGTTTGATCGTTTCTCA 169665 Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931 ||||||||||||||| || ||| | | |||| ||||| |||| || ||| Sbjct 169664 CGACTCTGGCTTCCTCGACAACGTCACTACCGACATCTACCACTACGAGCCCAACAAGAA 169605 Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCC 279989 ||| | ||| ||||||||| | || || ||| ||||| ||||| Sbjct 169604 GCTGGCGTGCTACAAGGGCAACCTGGCCAACTT--TGTCAAGCTCCGCCCCGAGGCCAAG 169547 Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049 |||||| || || || | | ||| | ||||| | || |||| ||| Sbjct 169546 AGCTACTACACGCTCTCGGCTTCCCAGGTCCAGTTCAAGTTCCC-GCCCCCGGGTATCTT 169488 Query 280050 GA-GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCT 280106 || || ||| || | || || ||||| | | || |||||||| Sbjct 169487 GACCGGTGTCAAGTCTCTGACCCGTGCCATCATCCGCATGACC--AACGTCTCCTACCAA 169430 Query 280107 TATCCCAATGGCCCCAA-CAT--CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCA 280163 || ||||| | ||||| | | | | ||| |||| || ||| || || || || Sbjct 169429 TACCCCAAGGCTCCCAAGCCTTCCCTGAGCGAGGTCACCTGCCAGCTTACTCTGTCGTCC 169370 Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 | | | |||| || ||||| ||||| || ||||||||||| ||||| |||| ||| Sbjct 169369 AGAGTAGCCATCATCGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAAGATCCTTACT 169310 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTA 280282 || ||| |||| | ||| | | | |||||| |||||| |||| || | ||| Sbjct 169309 GGTGAGGTTATTCCCAC-CACCGGTAAGGTAGAGAAGCACCCCAACCTGCGTATCGGTTA 169251 Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342 | || ||||||||| || | ||| | |||| || || || | ||| || ||||| || Sbjct 169250 CATCAAGCAGCACGCTCTCGAGCACGTTGAGATGCATCTCGAGAAGACACCCAACCAGTA 169191 Query 280343 CATTCAGTGGCGCTATGC 280360 | | |||||||| || || Sbjct 169190 CCTCCAGTGGCGTTACGC 169173 >seq319 Length=296375 Score = 107 bits (118), Expect = 4e-18 Identities = 186/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| |||| ||||||||||| || ||||| | | | || || | || Sbjct 228439 CTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGA 228380 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||| |||||||||| |||||||| |||| | ||||| | ||||| Sbjct 228379 GATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTG 228320 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 ||| || || | |||||| || |||||||||| | |||||||| || |||| | Sbjct 228319 GATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATG-T 228261 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | ||| || | || ||| ||||||||| ||||||||||||| ||| |||| Sbjct 228260 CGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGAC 228201 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTC 293381 | ||| ||||| || ||| ||| || Sbjct 228200 GCTGGTAGATGTTGGAGGTGTAGGGCTC 228173 >seq604 Length=803295 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 189212 GGCGAGGACCTTTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATCCTGCTCAAC 189153 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 189152 CAGACTCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 189093 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 189092 GGCAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 189034 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 189033 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 188992 Score = 96.9 bits (106), Expect = 7e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | || |||||| ||||||| | ||||| ||||| |||||||| || || | Sbjct 187840 CCAACTTCGGCCTGGACGCCGAGTTGGTTTCCCACTCCCGCATGCGCGGTCTGTCCGGTG 187781 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | ||| | | || ||||| ||||||| |||||| ||||||| Sbjct 187780 GTCAGCGTGTCAAGGTCGTCCTTGCTGCCTGCTCT-TGGCAACGTCCTCACTTGATCGTC 187722 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || ||||||||||||||||| || ||||| || Sbjct 187721 CTTGACGAGCCTACCAACTACCTCGACCGTGA 187690 >seq174 Length=323381 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 25537 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 25478 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 25477 CCCACGTCGGGCTCAATTC-CCGTC 25454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027819680093300