Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq511 172 1e-37 seq84 161 2e-34 seq604 138 2e-27 seq58 134 3e-26 seq497 109 1e-18 seq294 84.2 4e-11 >seq511 Length=493796 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || |||||||| || |||||||| || |||||| Sbjct 427645 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 427704 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || ||||| || || Sbjct 427705 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 427764 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 427765 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 427824 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| |||||||||||||| |||||||| || Sbjct 427825 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGAT 427874 >seq84 Length=81435 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | || ||||| ||||| || |||||||| ||||| Sbjct 62428 CCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTC 62369 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || |||||||| || || || || || | || |||||||| ||| Sbjct 62368 AAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGA 62309 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||||| ||||| || Sbjct 62308 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACC 62249 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || ||||||||||||||||| |||||||| Sbjct 62248 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202 >seq604 Length=803295 Score = 138 bits (152), Expect = 2e-27 Identities = 661/1036 (64%), Gaps = 40/1036 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||||||| ||||||||||||| || || ||| |||||| Sbjct 188203 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 188262 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 188263 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 188322 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || |||||||| |||||||| |||| |||||| ||||| ||||| ||||| Sbjct 188323 ACGAGCTCACCAGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGACCAATG 188382 Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG-- 225216 || | || ||||| || | ||| ||| | | || ||| ||||| || Sbjct 188383 ACCGCGATACGGGAGCCGAGAGAGCA--CTGGAAAGAAATGTC-CTG--GATCTGGGGCT 188437 Query 225217 -GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGT 225266 || || |||| |||| || | ||||||| |||||| | Sbjct 188438 TGCTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTGG 188491 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||||||||| ||| || | | || Sbjct 188492 CCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAGT 188551 Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTC 225386 | | || |||||||| || || |||| ||| ||||| | |||||| | Sbjct 188552 CGCTGAGCTCGTAGTAGGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTCAGGTTAC 188611 Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCG 225445 | ||| | ||||||||| | || |||| || || || ||| | ||| || | Sbjct 188612 CACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTTG 188667 Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAG 225504 || |||||| ||||||||||||| || |||||||| | || | | || | | ||| Sbjct 188668 TCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGAGTTC-TGGAG 188723 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | |||||| ||||| | ||||||| |||||| || || ||||| ||||| Sbjct 188724 GTACTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGAAG 188783 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 |||||| || | | || || || || | || |||||||| ||||| || || Sbjct 188784 CAGGATATCGGGGGCCTCGAAGACAGCACGGCACAAAGCGAGCTTCATCTTCCAACCACC 188843 Query 225625 GGACAGGGAGCCGATTGAAACAGAGTGCTTAGCT-TCGTCAAAGCCGTACTCCAGGAGCG 225683 || |||| ||| | | | | | ||| ||| ||||||| |||| ||| Sbjct 188844 AGAGAGGGCAGAGATCTCACCCTTGACCAT-GCTGTCGGTAAAGCCGAACTCGTTCAGCT 188902 Query 225684 T---CTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGT 225740 | || || | || || || | | | ||| | | | | | | | Sbjct 188903 TGGCCTCGACGTCGGCCTGGGAAGTCTCGACACCAGCATCCTGGAGCTTCTTCATGGTCC 188962 Query 225741 AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCC 225800 | || |||||| || | | ||| | ||||| |||||| || ||| | || ||| Sbjct 188963 ACTCGATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGACGGTCT 189022 Query 225801 GGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGG 225860 || || || | |||||| ||||| | ||| | || || || || | || | Sbjct 189023 TGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATGAGAG 189082 Query 225861 TACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGA 225920 | |||||| | |||||||||||| || ||||| | | || ||||||| || Sbjct 189083 TGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGA 189142 Query 225921 GGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACA 225980 || | || ||| || ||||||||| |||| |||||||| ||||| ||| | ||| | Sbjct 189143 GGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCAAA 189202 Query 225981 GGTCCTCACCCTCCTC 225996 ||||||| |||||||| Sbjct 189203 GGTCCTCGCCCTCCTC 189218 >seq58 Length=215898 Score = 134 bits (148), Expect = 3e-26 Identities = 321/479 (67%), Gaps = 16/479 (3%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 121652 TTCATGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCG 121593 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048 | ||||| ||| |||||||||||||||||||| | | | | | || |||| Sbjct 121592 CCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGT--TGGAAGACTTGTAGAC--CTTGTC 121537 Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108 | ||||| || || | |||||| || || ||||| |||||||| ||||||||| Sbjct 121536 ATTGCCGAGAGCAACCAAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTT 121477 Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168 ||||||||||| | || ||| || | || ||| | ||| |||| || | Sbjct 121476 GGAGTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTT 121417 Query 10169 GACCGCTTCCTCGACGATG--CTC-TTTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCT 10224 ||| || || ||| |||| ||| | ||| | | ||| | ||||| ||| | Sbjct 121416 GACAGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGT 121361 Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284 || || ||||| | || | ||| || ||||| || || ||| | ||||| Sbjct 121360 GAGAGTAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGT 121301 Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344 |||| || |||||||||||| || || || || |||||||| |||| | ||| | Sbjct 121300 TGGAGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGG 121241 Query 10345 ACCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG 10403 ||| ||| | | |||||| ||| | |||| ||||| |||| ||||||||| Sbjct 121240 CACCGCTGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAG 121182 >seq497 Length=853749 Score = 109 bits (120), Expect = 1e-18 Identities = 144/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGA---TGGACGACACGTTCGTCAGGCCCTT 225501 ||| ||||||||||||||||| || || || | ||| | || || || ||| Sbjct 169646 GTCGAGGAAGCCAGAGTCGTGAGAAACGATCAAACTGGTAATCTCGGG-GT--GGGTCTT 169702 Query 225502 GAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAG 225561 ||||| || |||||| || | |||| ||||||| |||||| ||||||||||| || Sbjct 169703 GAGGTAGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTGGTAGGTTCGTCGAG 169762 Query 225562 AAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCC 225621 ||||||| ||| || | |||| ||||| || | |||| || |||||| ||||| || Sbjct 169763 CAGCAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAGAGCCAACTTCATCTTCCATCC 169822 Query 225622 CCCGGACAGGGAGCCGA 225638 || ||||| ||||||| Sbjct 169823 ACCAGACAGAGAGCCGA 169839 >seq294 Length=143965 Score = 84.2 bits (92), Expect = 4e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||| |||||||| || | ||| | ||||||| ||||||||||||| ||||| || Sbjct 12971 AATGCCCTCCTTGTCCTGGACCTTGGACTTGACGTTGTCGATGGTGTCTGACGATTCGAC 12912 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTG 68447 || | ||||||||| || || ||||| |||||| Sbjct 12911 CTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 12878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921607423636000