Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq319 499 6e-136 seq58 237 3e-57 >seq319 Length=296375 Score = 499 bits (552), Expect = 6e-136 Identities = 1200/1787 (67%), Gaps = 79/1787 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || |||||||||| |||| | || || Sbjct 228235 GTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGG 228176 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || ||| ||||||||| ||||||| ||||| |||||||||||||||| || Sbjct 228175 CTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGAC 228116 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAG---TC 244266 || ||| ||| | || |||||| ||| | |||| ||| ||| | || Sbjct 228115 GAGAAGAGAGTTGCGGACACCGTGC-------TGCTTAATCTG--CTCCTTCAAAGCATC 228065 Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326 ||| | || |||| ||| | | |||| |||||||||| |||| || | |||| Sbjct 228064 CCA---GTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTG 228008 Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGC 244385 || ||| |||||||| ||| ||||||| || || || |||||||| || | Sbjct 228007 AGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGA 227948 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445 | || |||||| |||| ||||||||||||||||||| ||||||| | |||||| |||| Sbjct 227947 CATGGT-GAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGCCT 227889 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | | |||||| || | | || |||| | || || || ||||| || |||| Sbjct 227888 CGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGA 227829 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 |||||||| | ||| ||| ||||| | || || | || ||||| |||| Sbjct 227828 GACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGA 227769 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 ||||||| | |||| ||||||||| | | || ||| ||| ||| ||| | Sbjct 227768 CGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGA 227709 Query 244626 AGTCGTA--CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 ||||||| ||| ||||| | | || | ||||| | ||||||| Sbjct 227708 AGTCGTAGACTC--------CCTCGTTG-TAGTCA-----ACAAAGGTGGGCAGGGCGAG 227663 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 ||||||||||||||| || ||||| || | | ||||| || |||||| ||||| Sbjct 227662 CGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCA 227603 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 |||||| || ||| ||||| |||| || || ||| |||| |||| ||| || Sbjct 227602 GAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 227543 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 |||||||||||||||||| || |||||| |||||| |||||| | | |||||| Sbjct 227542 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAG 227483 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGG 244922 | | |||||| | ||| ||||| |||||||| ||||| ||||| ||||| || Sbjct 227482 CTTCTGAGCCTTCATGGTCTTGCGACCCTTGCCCATCTGC-TCGTACTTCTCGTACAAGG 227424 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAG 244980 |||| ||||| ||| || ||| | ||||| ||||| || | ||||||||||| Sbjct 227423 CCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTG--GGGCACATGAG 227366 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 | |||| || || | || ||||||| ||||||||||||||| ||||||||||| | Sbjct 227365 AGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAG 227306 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 ||| ||||| | || | ||| ||| ||| |||||| | || ||||| ||||| Sbjct 227305 GAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTC 227246 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 ||||| ||| ||||||| ||||| | ||| | |||| || ||||| ||||||||||| Sbjct 227245 GAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCC 227186 Query 245161 TCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGC 245216 |||||||| | | | ||||| |||||||| || || |||| || | | Sbjct 227185 ACCCTGGTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACAC 227130 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGG 245276 |||| ||| ||||| ||||| || || | ||| || | | || ||| | ||| Sbjct 227129 CGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGC---GCGGATGC-GGTGG 227074 Query 245277 AC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCT 245332 || | || | || ||||| ||||||||| | |||||| |||||| |||||| Sbjct 227073 ACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCA 227014 Query 245333 GCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392 || ||||| || |||| |||||||| || || ||||| ||||||||||||| | Sbjct 227013 TAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCC 226954 Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGG 245452 | ||| | | | |||||| || ||||| |||||| || ||| | |||||| | Sbjct 226953 TGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATC 226894 Query 245453 AACCCGTACGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCT 245511 | ||| || | || | | || || | || ||| || ||| | |||| | Sbjct 226893 AGGTTGTAGGTTTCGATGACGCGC-TCAACGTCGTCACCCCAGATACCAACGGCGACACG 226835 Query 245512 CATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGA 245568 ||||| |||||||||| ||||| || || || | |||||| | ||| || Sbjct 226834 CATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAG---CTTGAGGAGGTATGA 226778 Query 245569 GCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGC 245628 | ||| | |||||||| || ||||| |||| |||||| || | || ||| Sbjct 226777 TCTCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 226718 Query 245629 TGCGTCGAGTCTC-TCGGCGTGCTTC-TGACTGACCTCGTA--AAACTTTTGCGCT-ATG 245683 | ||| || ||| || |||| || |||| | | ||||| | ||||| | ||| Sbjct 226717 AGAGTCAAG-CTCATCCTTGTGCCTCATGACAG-CGTCGTATGTGTCCTTTGCAATCATG 226660 Query 245684 AGGGGAGCCCTGAGCCCGGTGTCCGGATTGACGTTGAACCAGAGCCTCTTGCACACCTCC 245743 | | ||| || ||| | | || ||||||| | |||| | || || || Sbjct 226659 GGAGACGCCTTG---CCGTTCTTGGGGTTGACGTAGTGGTAGAG---GTCGCTGACAACC 226606 Query 245744 GAGAAC--TTGGGGC-TGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCCGCCAAC 245800 || || ||| | |||| |||| || ||||||| |||||| || || || |||| Sbjct 226605 GAAGACCATTGCTTCTTGGTTTGCTTGTGGAGGTTGGAGACTGCGATACGAGCAGCCAGG 226546 Query 245801 TTGCTGTAGTCGGGGTGAGTGGTGGTCATGTTGGAGGCCGTGTGGGC 245847 || |||||||||||| ||| |||||||| || || || | ||| Sbjct 226545 ATGGCGTAGTCGGGGTGGGTGACGGTCATGTAGGCAGCAGTTTCGGC 226499 >seq58 Length=215898 Score = 237 bits (262), Expect = 3e-57 Identities = 373/524 (71%), Gaps = 25/524 (5%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 ||||||||| |||||||| |||||||| || || ||||| || | || | | | Sbjct 121126 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATT-AGCGATGAGAAGTCCTC 121184 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | || | || || ||||| ||||||| ||||| ||||||||| || ||||| Sbjct 121185 CTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT 121244 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 |||||||||||||||||||||| || ||| | |||||||| || |||||||| |||| Sbjct 121245 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCT-TATGCCCGGTCTGACCTTCTCCAACG 121303 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | || ||| | || ||||| || || | ||||| ||||||||||| | ||| | Sbjct 121304 AGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTC---TC 121360 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC---CGGGCCATCATCACGGAGGCCGTGG 42927 |||||| | || |||| | | ||| |||| || ||||||| || || || Sbjct 121361 ACCTCAAGAAC-CGCCCCAGCA--AGCAGGTCATTGAGGACATCATCGTCGATGCTGTCA 121417 Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACG 42987 |||| ||| |||||||||| || || | ||||| | ||| ||||||||||| | Sbjct 121418 AGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCA 121477 Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCA 43047 |||| ||| ||||||| ||| || ||||||| ||| | | | | |||| Sbjct 121478 ACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTCTT------GGTTGCTCTCG 121531 Query 43048 GC--CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGG 43101 || | | ||||||| | | |||||| ||||| |||||||||||||| ||| Sbjct 121532 GCAATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 121591 Query 43102 AGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| || |||||||| || |||||||||||| Sbjct 121592 GCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCAG 121635 Score = 141 bits (156), Expect = 2e-28 Identities = 236/337 (70%), Gaps = 13/337 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 120730 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACCTG 120789 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTG---TCT--GAGAACGAAAAGTTTTTCCTCA 42414 ||||||| || |||| | || | || ||| | || |||| ||| || Sbjct 120790 TCCAAGGATCTCCACGACTGGAA--CAATAAGATCAACGAGGATGAGAAGTACTTCATCT 120847 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 |||| || |||||||||||||| ||||||||||| |||||||||||| ||| | Sbjct 120848 CGCACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGC 120907 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | |||| ||||| ||| | ||||| || |||||||| |||||||| || | Sbjct 120908 GCTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATGA 120967 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATC 42591 | |||||| | ||||| ||| ||| | ||||||| |||| |||||| ||| | Sbjct 120968 TGGAGAACATCCACTCCGAGACCTACTC---GCTGCTCATCGACACCTACATCAAGGAGC 121024 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | | | |||| | || ||||| ||||| || || Sbjct 121025 CTGCCCAGCGCACGTACCTCTTCAACGCCATTGACAC 121061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944323854488000