Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq511 118 3e-21 seq84 100 7e-16 >seq511 Length=493796 Score = 118 bits (130), Expect = 3e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | |||| ||| || || ||||| || ||||||| | Sbjct 427645 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 427704 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| || |||||||| ||||| || | ||| Sbjct 427705 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 427764 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | ||| || || || Sbjct 427765 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 427824 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| ||||| || || || ||||||||||| |||||||| || Sbjct 427825 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGAT 427874 >seq84 Length=81435 Score = 100 bits (110), Expect = 7e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | ||| || ||||||| ||| || || ||||| || || || Sbjct 62431 TGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCA 62372 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||| || || || || || || || || ||||| |||||||| || Sbjct 62371 CTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGA 62312 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || |||||||| |||| || ||||| || || | || |||||| Sbjct 62311 GGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCG 62252 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || ||||||||||| |||||||| Sbjct 62251 ACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || || || || || |||| Sbjct 62200 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 62141 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || | || || ||||||||||||| ||||| || | || Sbjct 62140 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 62081 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| ||||| || || | || || || || || | ||| || || || Sbjct 62080 ATGCCCTCTTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACC 62021 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 || || ||||| ||||| ||||| || |||||||||| || Sbjct 62020 TCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGACTA 61981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179634751381400