Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq319 271 9e-68
>seq319
Length=296375
Score = 271 bits (300), Expect = 9e-68
Identities = 1173/1834 (64%), Gaps = 47/1834 (3%)
Strand=Plus/Minus
Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624
||||||||||||| || |||| | || ||||||||||| |||||||| || |
Sbjct 228572 TGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGC 228513
Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684
| |||||||| | | |||||| || | |||| | || || | ||||
Sbjct 228512 CGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTCGGGTCCTTCATGT 228453
Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744
| ||| | || || || ||||||||| ||||| || || ||||| | | |
Sbjct 228452 GAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAA 228393
Query 113745 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 113804
|| | | ||| ||||| ||||| |||| ||| ||| | ||| || || |
Sbjct 228392 CAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGT 228333
Query 113805 CCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 113861
||| || |||||||| ||| || | | |||| | | |||||| | | |
Sbjct 228332 TGGGGATGTTCTGGATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGG 228276
Query 113862 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 113921
|||| ||||| || | |||||||| || ||| |||||||| |||||||
Sbjct 228275 ACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCAC 228216
Query 113922 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 113981
| || || || | | | ||||| |||| ||||| |||||||||||||| ||||| |
Sbjct 228215 CAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGC 228156
Query 113982 CCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 114041
||||||| || | |||| ||| || |||||||| || | |||||| ||| |||| ||
Sbjct 228155 CCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACAC 228096
Query 114042 CCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 114101
| | | | |||| | ||||| | || |||||||| || | | || | |
Sbjct 228095 CGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAGATCCGAGGGCTTGACAT 228036
Query 114102 GCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATG 114161
|||||| ||| |||||||||| || || || | || || ||||| | |||| ||| |
Sbjct 228035 TCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 227976
Query 114162 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218
||||||| ||| |||| | | || | | |||||| ||||| || || ||||
Sbjct 227975 GGCCCTCCTCCTTGGCCAGCTGCACCGACATGG---TGAGGGCAGCGTGGTAGATGGTCT 227919
Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAA 114278
| || || || | | |||||| || || || | | ||| |
Sbjct 227918 CGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCA 227859
Query 114279 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 114338
|| |||| || ||||| ||||||||||| || || ||||| || | ||| || |
Sbjct 227858 GGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGT 227799
Query 114339 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 114398
| ||||| || || || || || ||||| | || || || || | |
Sbjct 227798 TGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAA 227739
Query 114399 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATC-AAAACTGCGAGTCTCTTCATTG--- 114454
| |||| |||| || || ||||| | | | || | ||| | ||| | | |
Sbjct 227738 CGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACTCC----CTCGTTGTAGTCA 227683
Query 114455 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 114514
||| | | || ||||||| || ||||| || || |||| | |||||| | |
Sbjct 227682 ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAG 227623
Query 114515 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 114574
||||| ||||| ||||| || | || || || || ||||| | |||||| || ||
Sbjct 227622 TACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTG 227563
Query 114575 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634
||| ||| ||||||||||| |||||| | || | || ||||| || |||| |
Sbjct 227562 CTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCC 227503
Query 114635 TTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTG----GCTCGCCCCT 114689
| ||| || || | ||||| | || | | || || ||| ||| || |||| |
Sbjct 227502 TCGAGGATGGCATACCAGAGCTTCTGAGCCT-TCA---TGGTCTTGCGACCCTTGCCCAT 227447
Query 114690 CCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTG 114749
|| ||||||||| ||| | ||| |||||||| || || | || | || || |
Sbjct 227446 -CTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAG 227388
Query 114750 GTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAG 114808
| || || | ||||| | ||||| ||| | ||| || ||| || | ||||||||||
Sbjct 227387 G-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAG 227329
Query 114809 AGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 114868
||||| || |||||||| || ||| || || || |||| | || || | || ||
Sbjct 227328 AGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGG 227269
Query 114869 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 114928
|| ||||| ||||| ||||| | || ||| |||||||| || || ||||| | |||
Sbjct 227268 TTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCG 227209
Query 114929 ATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAAT 114982
| | || | ||| | | ||| |||||| || || | || ||| || ||
Sbjct 227208 AAAGCACCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 227152
Query 114983 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTA 115042
|| || ||||| || | || ||| | || || || || || |||| ||
Sbjct 227151 ACACGGAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCG 227092
Query 115043 TTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 115102
|||| | || |||| || | |||||| || || ||| ||| ||||| |||
Sbjct 227091 GTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCG 227032
Query 115103 CACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAG 115162
|| | |||| || | ||||| || || || ||||| |||| | ||| ||||||
Sbjct 227031 CAAGTCTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAG 226972
Query 115163 CAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 115221
|| |||| || ||||| || ||||| ||||||||||| || || | ||||| |
Sbjct 226971 CAAGAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGT 226913
Query 115222 GAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 115279
|| | | |||| |||||| | |||||| || | |||| || ||| || ||
Sbjct 226912 GA--AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCC 226855
Query 115280 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 115339
||||| | | ||| ||||| | ||||| |||||| | || | | || ||
Sbjct 226854 CAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCA 226795
Query 115340 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 115373
||| | ||||||| ||||||| |||||||
Sbjct 226794 AGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGA 226761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597343893004000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |