Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq84 98.7 1e-15 seq1288 82.4 8e-11 >seq84 Length=81435 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || || |||||||| || | | |||||| |||| ||||||||| Sbjct 61892 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGC 61833 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| |||| || ||||||||||| || ||||| || || || || || || ||| Sbjct 61832 TTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTT 61773 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| || | ||||| || || || || | || | |||||||||||| Sbjct 61772 GACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 61714 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || |||||||||||||| | | ||| || |||| |||||||||||||| Sbjct 62170 GTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCT 62111 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | ||||||||||| || ||||| || ||||| || || || ||| ||| Sbjct 62110 GCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATCTTTGACTTG 62051 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | |||||| | || || || | || | |||||||||||| | || Sbjct 62050 ACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTC 61991 Query 64427 TTTACGA 64433 || |||| Sbjct 61990 TTGACGA 61984 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || ||||||| |||||| || || || ||||||||||| Sbjct 62429 ACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACT 62370 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || | |||||| || ||| | || || ||||||||||||||||| Sbjct 62369 CAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGG 62310 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| || || || || || || || Sbjct 62309 AATGCCCTCCTTGTCCTGGATCTT 62286 >seq1288 Length=383550 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || |||||| |||| || |||||||||||||| | || Sbjct 214322 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 214263 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | |||||||||||||| || || || || || || || || || ||| ||| || Sbjct 214262 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 214203 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || || || || || | || | |||||| || |||| || || |||||| Sbjct 214202 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 214143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636680772000