Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq511 104 2e-17 seq58 104 2e-17 >seq511 Length=493796 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || || || | | | |||||||| || |||||||||||| Sbjct 427645 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 427704 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | | |||| || ||||| ||||| || || Sbjct 427705 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 427764 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| |||||||| Sbjct 427765 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 427823 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || ||||| || || || || || || ||||||||| Sbjct 427824 CTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATG 427872 >seq58 Length=215898 Score = 104 bits (114), Expect = 2e-17 Identities = 340/524 (65%), Gaps = 27/524 (5%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGC-GACACCGC 52384 || || ||| | ||||| ||||| | ||||| |||||||||| || | || | | Sbjct 121123 GTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATT-AGCGATGAGAAGTC 121181 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 | | | ||| |||| | || ||||||||| || ||||| | || || ||| Sbjct 121182 CTCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGC 121241 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||| ||| ||||||| | | || | | || | |||||||| ||||| ||| ||| Sbjct 121242 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAA 121301 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTAC----- 52559 |||| |||| || || || || || || ||||| ||||| || |||||| |||| Sbjct 121302 CGAGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCA 121361 Query 52560 ----AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCT-GAGCATGTTCAAGG 52614 |||| ||| | | | | | | ||||| ||| | || ||| |||| Sbjct 121362 CCTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGT-CAAG- 121419 Query 52615 AGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCA 52674 || || ||||||| | || | || ||||| || ||||| |||| Sbjct 121420 -----------ATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCA 121468 Query 52675 TGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734 ||||| | | ||| ||||||| |||||||| || || || || ||||| | Sbjct 121469 TGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTCTTGGTTGCTC 121528 Query 52735 TCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793 |||| | | ||| || || ||| || ||| || ||||| || ||| | ||||| || Sbjct 121529 TCGGCAATGACAAGGT-CTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCC 121587 Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | |||||||||||||| || |||||||| || | ||| || Sbjct 121588 CTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 121631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254335736000