Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq319 152 8e-32 >seq319 Length=296375 Score = 152 bits (168), Expect = 8e-32 Identities = 455/683 (67%), Gaps = 18/683 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || ||||||||||||| | || | |||| ||||| | | ||| ||||||||| Sbjct 228583 CTGGTCGACGGTGAACTGAATGG-GAGCAGCAGCAG-CCTGCGTGCGCAGGTAGTACATG 228526 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| ||||| || ||| ||| | |||||| | | |||| || | | Sbjct 228525 CCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTC 228466 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 ||||| |||||||||||| || ||||| ||||||||| ||||| || || || || Sbjct 228465 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATG-AAGGCACCACGGTCGGC 228407 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 ||||| | | || || |||||| |||||||| || |||||| ||| | | || Sbjct 228406 AGCCATCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGAC 228347 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | ||| | | | | || || ||| || ||||| ||||| || | | || Sbjct 228346 CTCAGTAGGAATGT-TGGGGATGTTCTGGATGGAACCGTTCTCGGCAATGATGCGGTTCT 228288 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | | || ||||| |||| || || ||| || || ||||||| | Sbjct 228287 TCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAA 228228 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || || | || || | || | | | |||| |||| | || || || Sbjct 228227 CCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGC 228168 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||||||| || ||||| | ||||||||| || |||||||| || | ||| || | Sbjct 228167 ACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAG 228108 Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTC---GTGCATC 204370 ||||||| ||||||| | | | |||| ||||| || |||||| | | ||| Sbjct 228107 AGTTGCGGACACCGTGCTGCT-TAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAG-ATC 228050 Query 204371 GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430 | ||| || || ||||||||| |||| | |||||| ||| || ||| ||| Sbjct 228049 CGA--GGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCC 227992 Query 204431 TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGTG 204489 | ||||||| | || || ||||| | |||||| |||| ||| || | ||| Sbjct 227991 TCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGC-TGCACCGACATGGTGAGGGCAGC 227933 Query 204490 ATAGTACATGGTCTCAAAGATCT 204512 | ||| |||||||| ||||||| Sbjct 227932 GTGGTAGATGGTCTCGAAGATCT 227910 Score = 140 bits (154), Expect = 5e-28 Identities = 447/681 (66%), Gaps = 18/681 (3%) Strand=Plus/Minus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| || ||||| ||| |||| || ||||| ||| ||| || || || Sbjct 227443 CTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 227384 Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 || ||||| ||||| |||| ||| | || | | |||||||| ||| || ||||| Sbjct 227383 TTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTC 227324 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 | ||||| ||| || || || |||||||| | || | || | || ||||||| Sbjct 227323 GGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTT 227264 Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 ||| |||| ||| || | | ||||||||||| ||||| | | | ||| | | Sbjct 227263 GCGCAAATCCAAG-AAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAG 227205 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 | || || | |||||| ||||||||||| || ||||| | |||||| || || | Sbjct 227204 CACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGA 227145 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCC 205418 |||| || || | |||||||| ||| |||||||||| | || ||||| || | Sbjct 227144 GCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGC 227085 Query 205419 TCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC-ACT 205475 | || |||| | | ||||| || || | ||||| |||| ||||| | | Sbjct 227084 GGATGCGGTGGACGTTG--AGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGT 227027 Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCAC 205534 |||| || ||| ||||| || | || || || ||| || |||| || || |||| Sbjct 227026 CTTG-AGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCA-TGTCGACGAGGAAGCAA 226969 Query 205535 GAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594 || | ||||| ||| ||| || |||| |||||| ||||| |||||| ||||| Sbjct 226968 GAGGACAGCTGGGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAG 226909 Query 205595 CGCTTCTCGCTCAAACACC----TGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTG 205650 ||| |||| ||| | ||||||| || | |||| ||| | ||| || Sbjct 226908 AACTT---GCTC-GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA 226853 Query 205651 AATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCAC 205710 ||||| | ||||| | ||||| | ||| || |||||||| | | | ||| | Sbjct 226852 GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAG 226793 Query 205711 CTTGAGCAGATAGGCTCTCTC 205731 |||||| || || | |||||| Sbjct 226792 CTTGAGGAGGTATGATCTCTC 226772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795142278728000