Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq319 152 8e-32
>seq319
Length=296375
Score = 152 bits (168), Expect = 8e-32
Identities = 455/683 (67%), Gaps = 18/683 (3%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896
|| ||| || ||||||||||||| | || | |||| ||||| | | ||| |||||||||
Sbjct 228583 CTGGTCGACGGTGAACTGAATGG-GAGCAGCAGCAG-CCTGCGTGCGCAGGTAGTACATG 228526
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
|| ||||| ||||| || ||| ||| | |||||| | | |||| || | |
Sbjct 228525 CCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTC 228466
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015
||||| |||||||||||| || ||||| ||||||||| ||||| || || || ||
Sbjct 228465 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATG-AAGGCACCACGGTCGGC 228407
Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075
||||| | | || || |||||| |||||||| || |||||| ||| | | ||
Sbjct 228406 AGCCATCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGAC 228347
Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134
| ||| | | | | || || ||| || ||||| ||||| || | | ||
Sbjct 228346 CTCAGTAGGAATGT-TGGGGATGTTCTGGATGGAACCGTTCTCGGCAATGATGCGGTTCT 228288
Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194
|| | | || ||||| |||| || || ||| || || ||||||| |
Sbjct 228287 TCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAA 228228
Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254
||| || || || | || || | || | | | |||| |||| | || || ||
Sbjct 228227 CCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGC 228168
Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314
|||||||||||| || ||||| | ||||||||| || |||||||| || | ||| || |
Sbjct 228167 ACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAG 228108
Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTC---GTGCATC 204370
||||||| ||||||| | | | |||| ||||| || |||||| | | |||
Sbjct 228107 AGTTGCGGACACCGTGCTGCT-TAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAG-ATC 228050
Query 204371 GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430
| ||| || || ||||||||| |||| | |||||| ||| || ||| |||
Sbjct 228049 CGA--GGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCC 227992
Query 204431 TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGTG 204489
| ||||||| | || || ||||| | |||||| |||| ||| || | |||
Sbjct 227991 TCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGC-TGCACCGACATGGTGAGGGCAGC 227933
Query 204490 ATAGTACATGGTCTCAAAGATCT 204512
| ||| |||||||| |||||||
Sbjct 227932 GTGGTAGATGGTCTCGAAGATCT 227910
Score = 140 bits (154), Expect = 5e-28
Identities = 447/681 (66%), Gaps = 18/681 (3%)
Strand=Plus/Minus
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119
|||||| || ||||| ||| |||| || ||||| ||| ||| || || ||
Sbjct 227443 CTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 227384
Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTC 205179
|| ||||| ||||| |||| ||| | || | | |||||||| ||| || |||||
Sbjct 227383 TTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTC 227324
Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239
| ||||| ||| || || || |||||||| | || | || | || |||||||
Sbjct 227323 GGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTT 227264
Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298
||| |||| ||| || | | ||||||||||| ||||| | | | ||| | |
Sbjct 227263 GCGCAAATCCAAG-AAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAG 227205
Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358
| || || | |||||| ||||||||||| || ||||| | |||||| || || |
Sbjct 227204 CACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGA 227145
Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCC 205418
|||| || || | |||||||| ||| |||||||||| | || ||||| || |
Sbjct 227144 GCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGC 227085
Query 205419 TCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC-ACT 205475
| || |||| | | ||||| || || | ||||| |||| ||||| | |
Sbjct 227084 GGATGCGGTGGACGTTG--AGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGT 227027
Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCAC 205534
|||| || ||| ||||| || | || || || ||| || |||| || || ||||
Sbjct 227026 CTTG-AGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCA-TGTCGACGAGGAAGCAA 226969
Query 205535 GAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594
|| | ||||| ||| ||| || |||| |||||| ||||| |||||| |||||
Sbjct 226968 GAGGACAGCTGGGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAG 226909
Query 205595 CGCTTCTCGCTCAAACACC----TGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTG 205650
||| |||| ||| | ||||||| || | |||| ||| | ||| ||
Sbjct 226908 AACTT---GCTC-GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA 226853
Query 205651 AATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCAC 205710
||||| | ||||| | ||||| | ||| || |||||||| | | | ||| |
Sbjct 226852 GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAG 226793
Query 205711 CTTGAGCAGATAGGCTCTCTC 205731
|||||| || || | ||||||
Sbjct 226792 CTTGAGGAGGTATGATCTCTC 226772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795142278728000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |