Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq84 134 3e-26
seq511 105 2e-17
>seq84
Length=81435
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || || ||||||||||| |||| |||||| ||| ||| || | |||||
Sbjct 62413 AGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCC 62354
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| || || ||||| |||||||||||||| ||| ||| || || |||
Sbjct 62353 TCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 62294
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| |||||||| | ||| || || | || || |||
Sbjct 62293 TGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 62234
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || || ||
Sbjct 62233 TTGCCAGTGAGGGTCTTGACGAAGATCTG 62205
Score = 107 bits (118), Expect = 5e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | |||||| || |||||||| || | |||||| || | || |||
Sbjct 62194 CGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTC 62135
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||| || || |||||||| || |||||||| | ||||||||||| || ||| ||
Sbjct 62134 CGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCC 62075
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| |||||||||||| ||| || |||| ||| || | | || || || |
Sbjct 62074 TCTTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGG 62015
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617
||||| ||||| || || || || || ||
Sbjct 62014 GTGATGGTCTTGCCGGTAAGCGTCTTGAC 61986
Score = 102 bits (112), Expect = 2e-16
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| || || |||||||| |||| ||||||||| | || ||
Sbjct 61910 CGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 61851
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || ||||||||||||||||| || || ||||||||||| || ||| ||
Sbjct 61850 CGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCC 61791
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| |||||| ||| || |||| ||| || | | || || || |
Sbjct 61790 TCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAGG 61731
Query 199589 GTGATCGTCTTACCCGTGA 199607
||||| ||||| || ||||
Sbjct 61730 GTGATGGTCTTGCCGGTGA 61712
>seq511
Length=493796
Score = 105 bits (116), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| | ||| || || |||||||| |||| ||||||||| | | ||
Sbjct 427651 CGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 427710
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || ||||||||||| || ||||| || ||||||||||| || || ||
Sbjct 427711 CGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCC 427770
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| |||||| | | || || || |
Sbjct 427771 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 427830
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||||||||| || || || || || || ||
Sbjct 427831 GTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTG 427868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178901963587100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |