Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1288 138 1e-27 seq511 131 2e-25 seq84 114 1e-20 >seq1288 Length=383550 Score = 138 bits (152), Expect = 1e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| | Sbjct 214324 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 214265 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||||||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 214264 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 214205 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | || ||||| || |||||||| || || || | Sbjct 214204 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 214145 Query 46584 A 46584 | Sbjct 214144 A 214144 >seq511 Length=493796 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| ||||||||||| || || || Sbjct 427680 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAA 427739 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 427740 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 427799 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||||| || | ||||| || || ||||| || || || || Sbjct 427800 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGAC 427859 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 427860 GAAGATCTGCAT 427871 >seq84 Length=81435 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || |||||||| |||||||| Sbjct 61881 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAA 61822 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 61821 AATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATT 61762 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | || ||| || || || || | |||||||| ||||| || Sbjct 61761 GTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 61714 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| || | || |||||| || || ||||| ||||| || || || | Sbjct 62189 ACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCC 62130 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| ||||| ||||||||||||||||| | || | || ||| || Sbjct 62129 GTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTT 62070 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| ||||| | | | || || || || || || | ||||| Sbjct 62069 GTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGAT 62010 Query 46558 GGTTTTGCCCGTCAGCGTTTTAAC 46581 ||| ||||| || ||||| || || Sbjct 62009 GGTCTTGCCGGTAAGCGTCTTGAC 61986 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | ||||| | || || | |||||| || || || Sbjct 62393 CTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAA 62334 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||||||| ||||||| ||||| ||| Sbjct 62333 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 62275 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| |||||| || || | || || || ||||| || || || || | Sbjct 62274 TGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGA 62215 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 62214 CGAAGATCTGCAT 62202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565229214876000