Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1288 138 1e-27
seq511 131 2e-25
seq84 114 1e-20
>seq1288
Length=383550
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| |
Sbjct 214324 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 214265
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||||||||||||||||| || | || |||||||||| |||||| ||||| |
Sbjct 214264 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 214205
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | |||||| || || || || | || ||||| || |||||||| || || || |
Sbjct 214204 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 214145
Query 46584 A 46584
|
Sbjct 214144 A 214144
>seq511
Length=493796
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| ||||||||||| || || ||
Sbjct 427680 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAA 427739
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 427740 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 427799
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || ||||| || | ||||| || || ||||| || || || ||
Sbjct 427800 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGAC 427859
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 427860 GAAGATCTGCAT 427871
>seq84
Length=81435
Score = 114 bits (126), Expect = 1e-20
Identities = 126/168 (75%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || |||||||| ||||||||
Sbjct 61881 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAA 61822
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 61821 AATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATT 61762
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | || ||| || || || || | |||||||| ||||| ||
Sbjct 61761 GTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 61714
Score = 102 bits (112), Expect = 9e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| || | || |||||| || || ||||| ||||| || || || |
Sbjct 62189 ACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCC 62130
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || ||||||||||| ||||| ||||||||||||||||| | || | || ||| ||
Sbjct 62129 GTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTT 62070
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||| ||||| | | | || || || || || || | |||||
Sbjct 62069 GTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGAT 62010
Query 46558 GGTTTTGCCCGTCAGCGTTTTAAC 46581
||| ||||| || ||||| || ||
Sbjct 62009 GGTCTTGCCGGTAAGCGTCTTGAC 61986
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| || | ||||| | || || | |||||| || || ||
Sbjct 62393 CTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAA 62334
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||||| || | || |||||||||| ||||||| ||||| |||
Sbjct 62333 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 62275
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| |||||| || || | || || || ||||| || || || || |
Sbjct 62274 TGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGA 62215
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 62214 CGAAGATCTGCAT 62202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565229214876000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |