Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq729 342 7e-89 seq278 145 1e-29 seq1043 132 6e-26 >seq729 Length=525681 Score = 342 bits (378), Expect = 7e-89 Identities = 727/1081 (67%), Gaps = 16/1081 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||||||||| ||||| | || ||||| || || |||||||||||||| Sbjct 298229 TCACCGGACAGGATGGCGGCCTGGACGGCGGCACCGTAGGCAACGGCCTCATCGGGGTTG 298170 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || || || || | | | || || ||| Sbjct 298169 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGG 298110 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || ||||||| ||||| || | || | ||| || |||||||| | | Sbjct 298109 ATACGGGTGGAACCTCCGACCAGGACGATCTCGTGGACCTGCGACTTGTCGATCTTGGCG 298050 Query 7190 TC--TC--GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAG 7245 || || || | | | |||| || | || ||||||| |||| ||||| Sbjct 298049 TCAGTCAGGACGCGGT----CGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCACAG 297994 Query 7246 TTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATC 7305 ||||| || || |||||||| ||||| || ||||| || | ||| ||| | | ||| || Sbjct 297993 CTCCTCGAAGCGCGCACGGGTGATGGAGGTGTAGAAGTCGATGCCCTCGAACAGCGAGTC 297934 Query 7306 AATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365 || || |||| || || || | ||| || | || ||||| || ||||| || || || Sbjct 297933 GATCTCGATGGAGGTCTGGGCGGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCGGT 297874 Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425 || | ||| || || || || | ||| ||| | || ||||| || || || || || Sbjct 297873 GCGGAGACGGCGCAGCGCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAA 297814 Query 7426 CTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 ||| | |||||| | ||| | ||||| || |||||||||||||| || || Sbjct 297813 CTCGTTGACGAAGTGGTTGACGAGGCGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTC 297754 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545 || ||||| | ||||| || ||||| || | |||||| | | | || ||||| || Sbjct 297753 ACCAGCGGTGGACTTGACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAA 297694 Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAG 7605 ||||||||||| || || || ||||| ||||| ||| | || ||||| || || Sbjct 297693 GGTACCACCACCGAGATCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCCAG 297634 Query 7606 ACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGC 7665 ||||||||||| || || || || || || || || || || || ||| ||||| || Sbjct 297633 GCCGTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGC 297574 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||| | || || || || || || || || || ||||| |||||||| ||||| || Sbjct 297573 AATGAGACCGGCGTCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGT 297514 Query 7726 TACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGT 7785 ||||| |||| |||| | |||||| | | || || | || ||| ||| Sbjct 297513 GACGACGGCGTTGTTGACCTGGCCACCGAGGAAAGCCTCGGCAGTCTCGCGCATCTTGAC 297454 Query 7786 AAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAAC 7845 || ||||| | || ||||| || | || ||| || || || || || || || || Sbjct 297453 CAGGACCATGGCCGAGATCTCCTCGGGCGTGAACGTCTTGGTCTCGCCCTTGAACTCGAC 297394 Query 7846 TTCAATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATAT 7904 || || |||| || || | | | || ||||| ||| | | ||||| | Sbjct 297393 CTCGATGTTGGGCTT----GCCGTTCTTGTCGACCACCTTGAACGGGAAGTGCTTCATGT 297338 Query 7905 CGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTG 7964 || | || |||| |||| ||||| | ||||| || ||||| || || || || | Sbjct 297337 CGGCCTGCACCTCCGGGTCGTTGAACTTGCGCCCGATCAGGCGCTTGGCGTCGAACACCG 297278 Query 7965 TGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTAT 8024 |||| | |||||||| || |||||||| ||||| || ||||| ||||| || Sbjct 297277 TGTTGTGCGGGTTCATCGCCACCTGGTTCTTGGCCGCATCGCCGATCAGACGCTC---CG 297221 Query 8025 TTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTT 8084 | ||||| || |||||| | || || || |||| || ||||| ||||| || || |||| Sbjct 297220 TGTCCGTGAAGGCGACGAAAGACGGTGTGGTTCTGTTTCCTTGATCGTTTGCGATGATTT 297161 Query 8085 C 8085 | Sbjct 297160 C 297160 >seq278 Length=121813 Score = 145 bits (160), Expect = 1e-29 Identities = 359/541 (66%), Gaps = 13/541 (2%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 ||||| ||||| |||||||| || || || ||| ||| || ||| | | || Sbjct 21535 TCCTCGAAACGGGCACGGGTGATCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 21591 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| || || || || | ||| || ||||| || ||||| || | Sbjct 21592 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 21649 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | ||| || || ||||| |||| || || | || ||||| || || | Sbjct 21650 CGGTACGGAGACGGCGGAGAGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGCT 21709 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | | |||| ||||| | | ||||| || | |||||||||||| | Sbjct 21710 GGAAGTCCTTCTTGCAGTGGTCCAGGAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGGG 21769 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || || ||||| |||| ||| || | ||||| | | ||||||| Sbjct 21770 TGTCACCGGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 21829 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598 | || ||||||||||||| ||| | ||||| ||||| || | | | ||| Sbjct 21830 CGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 21889 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| || || || || || || || || || || ||||| || ||| | Sbjct 21890 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 21949 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 ||||||| || | | ||||| || || || || || || ||||| |||||||| | Sbjct 21950 GGCCAGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCGG 22009 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 |||| || | ||| || | | || ||||| |||| | || ||||| ||||||| Sbjct 22010 GGACGGTGATGACAGCCTTCTCAACCTTCTTGCCGATCTTGACCTCGGCGATCTCTTTCA 22069 Query 7779 T 7779 | Sbjct 22070 T 22070 >seq1043 Length=156765 Score = 132 bits (146), Expect = 6e-26 Identities = 226/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || || ||| || || | ||| Sbjct 85124 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTAGCCAAGACCTCGAAAACACCC 85183 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | || |||||||| || ||||||||||| ||||| | | || | Sbjct 85184 TGGTCGATGGAGAGCAGGGAAACATCGAAGGTACCACCACCAAGGTCGTAGACGATGATC 85243 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| |||| | |||| || |||||||| |||||||| || || || || || Sbjct 85244 TGGCGCTCGCCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTCG 85300 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||| || || ||| || || ||||| | | ||||| || || || || || Sbjct 85301 TTGACAATGCGGAGGACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGGCGC 85360 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || || || |||| ||||| ||||| | ||| Sbjct 85361 TGGTTGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCGTGGGTGACCTTCTTGCTGAGG 85420 Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783 || | || |||| || ||||| ||| Sbjct 85421 TAGGCCTCGGCGACCTCCTTCATCTTG 85447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122479092000