Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq319 259 6e-64 seq58 143 3e-29 >seq319 Length=296375 Score = 259 bits (286), Expect = 6e-64 Identities = 963/1495 (64%), Gaps = 31/1495 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | |||||| || || || |||| || Sbjct 226817 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 226876 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || ||| || |||||| | | |||| ||||| | || || |||||| Sbjct 226877 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCCTCTCCCACACTCTTC 226936 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || |||| ||||| ||| ||||| | | | |||||||| Sbjct 226937 AACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGAC 226996 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || || | ||| |||| || ||| ||||| ||| ||| ||| Sbjct 226997 TCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGT 227056 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || || || | || |||| || | |||| | || |||| || || || Sbjct 227057 GGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAAC 227116 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||| | | || ||||| || || || ||| ||| || ||||| || Sbjct 227117 GGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTC 227176 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 |||| | ||| ||| | | || || |||| | || |||||||| |||||| Sbjct 227177 GACCAGGGTGGCAACAAGCGCCCC---GGTGCTTTCGCCATTTACCTTGAGCCTTGGCAC 227233 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | || ||| | || ||||| ||||| || | ||||||| || | Sbjct 227234 GCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCC 227293 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || || || ||| ||| ||||||||||| || |||||||||||||| || ||| ||| | Sbjct 227294 CGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAAT 227353 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 || | ||| ||||| | || || || || || || || || |||| | || || Sbjct 227354 GGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTACGGCGA 227412 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262 ||||||||| ||| | ||| |||||||| | ||| | | | | | || ||| || Sbjct 227413 GGAGTTTGAGGCCTTGTACGAGAAGTACGA-GCAGATGGGCAAGGGTC-GCAAGACCATG 227470 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 ||| | || | | ||| | || || ||| || | || ||||||||||||| || | Sbjct 227471 AAGGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTT 227529 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 ||||| ||||| || ||| |||| ||||| || || ||||| | || ||| Sbjct 227530 CATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATCCG 227589 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || ||||||||||| || || || | || | | |||||| ||||| || Sbjct 227590 CAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTG 227649 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATT 112500 ||||| || || |||| || |||| | ||| || | || || || | | || | Sbjct 227650 CAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTC-TACGACT 227708 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || | || ||||| |||||| | || || Sbjct 227709 TCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATCGACG 227768 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||| ||| || ||||| || || ||| | ||||| || || |||| Sbjct 227769 TCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATCGGTC 227828 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCCG 112677 |||||||||| ||||| || |||| ||| | ||| || | | || || || Sbjct 227829 TCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGC---CCTTCGAGTCTC 227885 Query 112678 ACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGG 112737 ||| || || |||| | || || ||||| || || ||||| || || Sbjct 227886 CCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCT---CA 227942 Query 112738 CGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794 | | |||| || |||| ||| || || || || | || | |||||||| || | Sbjct 227943 CCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTG 228002 Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACT 112854 ||| || || | || || | ||| |||||| | | || || | || || |||| Sbjct 228003 TTTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACT 228062 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 |||| ||| | ||||| | || ||| || | ||| | || ||| |||| | | || | Sbjct 228063 GGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGC 228122 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | ||||| || ||| |||| | || |||||||| || || || |||||||| ||||||| Sbjct 228123 CCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACA 228182 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034 | | |||||||| | | | | || || || ||||| | |||||||| | Sbjct 228183 CCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGC 228242 Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089 || || | || ||| || || ||||| |||||| | | |||||| | | ||| Sbjct 228243 TCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCAT 228297 >seq58 Length=215898 Score = 143 bits (158), Expect = 3e-29 Identities = 168/225 (75%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 102155 |||||| |||||||| || || | ||||| || || ||||| |||||||| || Sbjct 121114 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGC 121170 Query 102156 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 102215 ||| ||||| ||||| || |||| ||| | || || || |||||||||||| Sbjct 121171 GATGAGAAGTCC---TCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATC 121227 Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275 |||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| ||| Sbjct 121228 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGT 121287 Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || ||||||||||||||| ||||||||||| ||||| || ||| Sbjct 121288 CTGACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCAC 121332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732312936000