Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq319 271 9e-68 seq655 100 3e-16 >seq319 Length=296375 Score = 271 bits (300), Expect = 9e-68 Identities = 1128/1754 (64%), Gaps = 57/1754 (3%) Strand=Plus/Minus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 |||| || ||| || || ||||| ||||| || || || |||||| || | |||| Sbjct 228549 GCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGC 228490 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | | ||| | ||||| || ||| | ||| | |||||| ||||| Sbjct 228489 ATGCTGGTTATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGG 228430 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTA-ATTTC 109574 |||||||| |||||| || || ||||| | | | ||| || || | || || Sbjct 228429 TCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCT----GCGAGATCTC 228374 Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 ||| ||||||||||||| ||||| ||| ||||||| |||||| || || || Sbjct 228373 CCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTGGATGGA 228314 Query 109635 GCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTT 109691 ||| || | |||| | | |||||| | | ||||| ||||| | | Sbjct 228313 ---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGAC 228257 Query 109692 GAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGG 109749 |||||| | ||||| | | ||||| || || ||||||||||| || || Sbjct 228256 GAGATCCTT--CAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGC 228199 Query 109750 AGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTG 109809 |||||||||| | |||||||| || || ||||| |||||||| | ||| || | ||| Sbjct 228198 TGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTG 228139 Query 109810 GAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGC 109869 || || |||||||| || | ||||||| ||| |||| ||| | | ||| | | || Sbjct 228138 CTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGC 228079 Query 109870 TCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCT 109929 || || || ||||| || | || | | | | || ||| |||||| || Sbjct 228078 TCCTTCAAAGCATCCCAGTCCCAGAGATC-CGAG-----GGCTTGACATTCCACATGTCA 228025 Query 109930 GGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACC 109989 || || | |||| || | |||| ||||||| | | ||| ||| | ||||| || Sbjct 228024 TACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCC 227965 Query 109990 TCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCA 110049 | ||||| || || || || || || || || ||||| || || | Sbjct 227964 TTGGCCAGCTGCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTG 227905 Query 110050 TTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCT 110109 || | | ||||| ||| | | |||||||| | || | | || |||| || Sbjct 227904 TTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCA 227845 Query 110110 AGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT 110169 |||||||| ||||||||||| |||||||| || |||||| | ||||| | Sbjct 227844 AGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGA 227785 Query 110170 ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATT 110229 || ||||| |||| |||||||| | || || || || || |||| Sbjct 227784 ACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACC 227725 Query 110230 TCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG---ACATATTTGGGGAGA 110286 || ||||| || | | | ||| | | | | ||| || | | ||| | |||| || Sbjct 227724 TCGTGGAGCTTCTGGAAGTCGTA-GACTCC--CTCGTTGTAGTCAACAAAGGTGGGCAGG 227668 Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346 || | || || || ||||| |||| ||| || || ||| || | ||| ||| Sbjct 227667 GCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCC 227608 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || || | |||||| || || || | ||||||||| || ||| |||| Sbjct 227607 GTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 227548 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 |||||||| ||||||||| | ||| ||||||| || ||||| | || ||| ||||| | | Sbjct 227547 GCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATAC 227488 Query 110467 CATA-CATCGGCGGCGG---GGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGT 110522 || | | || | | | || | ||||| | | || || | ||||||||| Sbjct 227487 CAGAGCTTCTGAGCCTTCATGGTC--TTGCGACC-CTTGCCCATC-TGCTCGTACTTCTC 227432 Query 110523 GTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT-GTCGGGAC 110581 ||||||| ||||||| |||| ||||| || | || || || || || ||| | Sbjct 227431 GTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG-GCATTCGTTGGGGC 227373 Query 110582 AGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACA 110641 | | ||| | ||| | ||| || ||| |||||||||||||| ||||| |||||||| | Sbjct 227372 ACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGA 227313 Query 110642 TCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCA 110701 || ||||||||||||| ||| |||| || | || ||||| ||| | |||| Sbjct 227312 GGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCA 227253 Query 110702 AAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA------GACAGCGATGGATCCCT 110755 | ||||| | || ||| | |||||| || || || || || ||| || | || Sbjct 227252 AGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCT 227193 Query 110756 TACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAA 110815 | | | || |||||| || ||||| || ||| |||||||| | ||||||||| | Sbjct 227192 T--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGA 227136 Query 110816 TAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGT 110875 | || | ||| ||| || || || ||| || |||| || ||| || Sbjct 227135 CGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGT 227076 Query 110876 GGATATGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGT 110933 ||| | | |||||| ||||| ||| ||| || | | ||| | ||| |||| || Sbjct 227075 GGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGT 227018 Query 110934 ACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTG 110993 |||| ||||| ||||| || || |||| || | | || |||||||| |||| ||| Sbjct 227017 GTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG 226958 Query 110994 AGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--G 111051 | |||| || || || ||||||||||| || | || ||| ||| ||| |||| Sbjct 226957 GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGA--AGAACTTGCTC 226900 Query 111052 GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCA 111111 |||||| |||||| || |||| || || || | ||| ||||||| ||| Sbjct 226899 GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCG 226840 Query 111112 ACTCGCATGAACAT 111125 || ||||||| ||| Sbjct 226839 ACACGCATGATCAT 226826 >seq655 Length=62607 Score = 100 bits (110), Expect = 3e-16 Identities = 329/505 (65%), Gaps = 25/505 (5%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || || | ||||| | || ||||| ||| | | ||| || | || Sbjct 20378 TCGAAACGGCCGGGACGCATCAGAGCCTTGTCGAGAATGTCGGCTCTGTTGGTGCCCGCG 20437 Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | || || | || | ||| | ||| |||||||||||| || ||||| | |||||| Sbjct 20438 AGCACAACCA--CCTG-CTCCTGGGTGTTGAAACCGTCCATCTCGGTGAGGATCTGGTTC 20494 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-------CACCTGCC--GAACGCTTC 11673 | || || ||||| |||||| | ||| | | |||| | || || Sbjct 20495 AGGGTAGCCTCGCGCTCGTCGTTGCCGCCCATGCGGTTGCCCTCCTGTCTCGATCG---- 20550 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 ||| | ||||| ||||| || ||||| | || || || ||| || ||| | Sbjct 20551 --ACCAATGGCGTCGATCTCGTCAATGAAGATAATGCAAGGGGCGTTCTTCCGCGCCGTT 20608 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791 |||| || || || || | | |||||||| ||||||||||| ||||| | | Sbjct 20609 GCGAACAGGTCGCGCACTCTGGAAGGACCAACACCGACGAACATCTCGACGAACTCGGAA 20668 Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | || || | ||||| |||||| || ||||| ||||| |||| || || || | Sbjct 20669 CCGCTGA-CGCTGAA-GAAGGGCACGCCGGACTCGCCAGCAGTGGCCTTGGCAAGCAGCG 20726 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTC 11911 ||||||| || || || | ||||| || | || || ||||||||||||||||| | Sbjct 20727 TCTTACCGGTTCCGGGAGGTCCAGCCAGGATAGCACCGCGGGGGATCTTGGCACCTAACC 20786 Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGG 11971 | ||||||| || |||| | |||| || | |||| | ||| |||||| Sbjct 20787 GCTCGAAGCGCTCGGGGGTCTTCAAGAAGCTGACGAACTCCATGATCTCCGTCTTGGCCT 20846 Query 11972 AGTCGATACCCTCAACATCGGTGAA 11996 ||| || || |||| ||| |||| Sbjct 20847 CGTCCATGCCGGCAACGTCGCTGAA 20871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588966429140000