Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq319 212 7e-50 seq58 96.9 4e-15 >seq319 Length=296375 Score = 212 bits (234), Expect = 7e-50 Identities = 967/1505 (64%), Gaps = 49/1505 (3%) Strand=Plus/Minus Query 105833 ATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892 ||| | | |||||| | | |||||| ||||| || | |||||| || | ||| Sbjct 228297 ATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAA 228238 Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952 |||||||| | ||||| || || || | | | | |||||||| | |||||| Sbjct 228237 GGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAG 228178 Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 || |||||||| || || || |||||||| || | |||| ||| || ||||| || || Sbjct 228177 GGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCG 228118 Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 106072 | | |||| ||| || | ||| | | ||| || | ||||| | | |||||||||| Sbjct 228117 ACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCC 228058 Query 106073 TAGTTGAGCTT--GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130 || || | || || || |||| |||| ||| | || || | || || || | Sbjct 228057 CAGA-GATCCGAGGGCTTGACATTCC-ACATGTCATACTGGAGGATGCCCTGAGAAACAG 228000 Query 106131 GAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCC 106189 | |||||||| | |||| |||| || | | | |||| | ||| | | Sbjct 227999 GGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATGGTG- 227941 Query 106190 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 106249 |||| ||||| || ||||| || ||||| || | || || || || Sbjct 227940 AGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGAC 227881 Query 106250 TCAAATG-CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 106308 || || | | || ||| | || |||| || ||||| || ||||| | ||| || Sbjct 227880 TCGAAGGGCATA-CGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGAT 227822 Query 106309 AGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAAT 106368 || | ||| ||||| || || || || || ||| || || || ||| || Sbjct 227821 GGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGAT 227762 Query 106369 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 106428 || || ||| || || | ||| | || |||| || || || || | | || | Sbjct 227761 GATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 227702 Query 106429 AGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 || || || | ||| ||| | | || ||||||| || |||| ||||| Sbjct 227701 -----GACTCCCT-CGTTGTAGTCAACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCA 227648 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542 ||||| |||||| | |||||| | ||| || || || | |||||| || Sbjct 227647 GACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCG 227588 Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 || || || | ||||| ||||| ||||| |||| |||||||||||||||||| | Sbjct 227587 GATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAA 227528 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661 ||| | || ||||| ||||| | || ||| || || | ||| | | || | | || Sbjct 227527 GGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTC-- 227470 Query 106662 CAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 |||| ||| ||| | ||| | ||||||||| ||| | ||| |||||||||| Sbjct 227469 --ATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCT 227412 Query 106719 CACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCA 106777 | || ||||| || || || || || || || || | |||| ||| | ||| Sbjct 227411 CGCCGTAGCAGTCGGCCAGGCCAGG-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCA 227353 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG--ATGAAAAGAGATCTC 106835 || ||| |||| ||||||||| ||||| |||||||| |||| | |||||| || | Sbjct 227352 TTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGG--TCAC 227295 Query 106836 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 106895 ||| |||| || | || ||||| || || || | ||| || | || ||| | Sbjct 227294 GGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGG 227235 Query 106896 CGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTT 106951 ||||||| |||||||| || | |||| || || | | | ||| | | || | Sbjct 227234 CGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCC-ACCCTGGTCG 227176 Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 || ||||| || ||| ||| || || || ||||| || | | ||| | || ||| Sbjct 227175 ACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTACCG 227116 Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || || |||| || |||| | | |||| || | ||||| || Sbjct 227115 TTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCA 227056 Query 107072 CCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 107129 || ||| ||| ||||| | ||||| | || | || || |||||||||| | || | Sbjct 227055 CCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGTGTCATAGATACCCTCAATAG 226998 Query 107130 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCA 107188 |||||||||| || ||| ||||||||| ||||| ||| || || || ||||| || Sbjct 226997 AGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG-GGCCTGAGGGGTACCGGCG 226939 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 107246 |||||||| || || | |||||| ||| | | |||| |||||| || ||| || | Sbjct 226938 TTGAAGAGTGTGGGAGAGGCGTGAGTGA--AGAACTTGCTCGACATCAGGTTGTAGGTTT 226881 Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306 | | ||| |||| ||| || || ||| || | ||| |||||||| | ||||| | Sbjct 226880 CGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCT 226821 Query 107307 GGGGT 107311 ||||| Sbjct 226820 GGGGT 226816 >seq58 Length=215898 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| ||||||||||| || || || || || || |||||| || || ||||| ||||| Sbjct 121332 GTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACC 121273 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | | ||| | ||| ||||||||||||||| || Sbjct 121272 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 121213 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCAT 117461 || || |||| || |||| |||||||||| ||||| || || ||| |||| Sbjct 121212 GGCGAAGGCAACGAGACGCTGGGCGAAGGAG---GACTTCTCATCGCTAATCCACTTCAG 121156 Query 117462 TGCCCATTTCGCCTTCTT 117479 ||||| | |||||||| Sbjct 121155 GGCCCAGTCGGCCTTCTT 121138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971212812000