Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq319 212 7e-50
seq58 96.9 4e-15
>seq319
Length=296375
Score = 212 bits (234), Expect = 7e-50
Identities = 967/1505 (64%), Gaps = 49/1505 (3%)
Strand=Plus/Minus
Query 105833 ATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892
||| | | |||||| | | |||||| ||||| || | |||||| || | |||
Sbjct 228297 ATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAA 228238
Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952
|||||||| | ||||| || || || | | | | |||||||| | ||||||
Sbjct 228237 GGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAG 228178
Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012
|| |||||||| || || || |||||||| || | |||| ||| || ||||| || ||
Sbjct 228177 GGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCG 228118
Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 106072
| | |||| ||| || | ||| | | ||| || | ||||| | | ||||||||||
Sbjct 228117 ACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCC 228058
Query 106073 TAGTTGAGCTT--GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130
|| || | || || || |||| |||| ||| | || || | || || || |
Sbjct 228057 CAGA-GATCCGAGGGCTTGACATTCC-ACATGTCATACTGGAGGATGCCCTGAGAAACAG 228000
Query 106131 GAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCC 106189
| |||||||| | |||| |||| || | | | |||| | ||| | |
Sbjct 227999 GGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATGGTG- 227941
Query 106190 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 106249
|||| ||||| || ||||| || ||||| || | || || || ||
Sbjct 227940 AGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGAC 227881
Query 106250 TCAAATG-CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 106308
|| || | | || ||| | || |||| || ||||| || ||||| | ||| ||
Sbjct 227880 TCGAAGGGCATA-CGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGAT 227822
Query 106309 AGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAAT 106368
|| | ||| ||||| || || || || || ||| || || || ||| ||
Sbjct 227821 GGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGAT 227762
Query 106369 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 106428
|| || ||| || || | ||| | || |||| || || || || | | || |
Sbjct 227761 GATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 227702
Query 106429 AGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482
|| || || | ||| ||| | | || ||||||| || |||| |||||
Sbjct 227701 -----GACTCCCT-CGTTGTAGTCAACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCA 227648
Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542
||||| |||||| | |||||| | ||| || || || | |||||| ||
Sbjct 227647 GACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCG 227588
Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602
|| || || | ||||| ||||| ||||| |||| |||||||||||||||||| |
Sbjct 227587 GATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAA 227528
Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661
||| | || ||||| ||||| | || ||| || || | ||| | | || | | ||
Sbjct 227527 GGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTC-- 227470
Query 106662 CAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718
|||| ||| ||| | ||| | ||||||||| ||| | ||| ||||||||||
Sbjct 227469 --ATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCT 227412
Query 106719 CACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCA 106777
| || ||||| || || || || || || || || | |||| ||| | |||
Sbjct 227411 CGCCGTAGCAGTCGGCCAGGCCAGG-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCA 227353
Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG--ATGAAAAGAGATCTC 106835
|| ||| |||| ||||||||| ||||| |||||||| |||| | |||||| || |
Sbjct 227352 TTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGG--TCAC 227295
Query 106836 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 106895
||| |||| || | || ||||| || || || | ||| || | || ||| |
Sbjct 227294 GGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGG 227235
Query 106896 CGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTT 106951
||||||| |||||||| || | |||| || || | | | ||| | | || |
Sbjct 227234 CGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCC-ACCCTGGTCG 227176
Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011
|| ||||| || ||| ||| || || || ||||| || | | ||| | || |||
Sbjct 227175 ACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTACCG 227116
Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071
|| || || |||| || |||| | | |||| || | ||||| ||
Sbjct 227115 TTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCA 227056
Query 107072 CCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 107129
|| ||| ||| ||||| | ||||| | || | || || |||||||||| | || |
Sbjct 227055 CCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGTGTCATAGATACCCTCAATAG 226998
Query 107130 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCA 107188
|||||||||| || ||| ||||||||| ||||| ||| || || || ||||| ||
Sbjct 226997 AGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG-GGCCTGAGGGGTACCGGCG 226939
Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 107246
|||||||| || || | |||||| ||| | | |||| |||||| || ||| || |
Sbjct 226938 TTGAAGAGTGTGGGAGAGGCGTGAGTGA--AGAACTTGCTCGACATCAGGTTGTAGGTTT 226881
Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306
| | ||| |||| ||| || || ||| || | ||| |||||||| | ||||| |
Sbjct 226880 CGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCT 226821
Query 107307 GGGGT 107311
|||||
Sbjct 226820 GGGGT 226816
>seq58
Length=215898
Score = 96.9 bits (106), Expect = 4e-15
Identities = 141/198 (71%), Gaps = 6/198 (3%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| ||||||||||| || || || || || || |||||| || || ||||| |||||
Sbjct 121332 GTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACC 121273
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||| | ||| | || | | ||| | ||| ||||||||||||||| ||
Sbjct 121272 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 121213
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCAT 117461
|| || |||| || |||| |||||||||| ||||| || || ||| ||||
Sbjct 121212 GGCGAAGGCAACGAGACGCTGGGCGAAGGAG---GACTTCTCATCGCTAATCCACTTCAG 121156
Query 117462 TGCCCATTTCGCCTTCTT 117479
||||| | ||||||||
Sbjct 121155 GGCCCAGTCGGCCTTCTT 121138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589971212812000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |