Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq511 95.1 8e-15 >seq511 Length=493796 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 427663 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 427722 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| ||||| || || || |||||||| | || | ||||||||||| Sbjct 427723 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 427782 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| || | ||| || || | ||| || || Sbjct 427783 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 427838 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || ||||| || ||||||||||| Sbjct 427839 CTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 427871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628456586400