Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq930 102 7e-17 >seq930 Length=1444712 Score = 102 bits (112), Expect = 7e-17 Identities = 422/667 (63%), Gaps = 68/667 (10%) Strand=Plus/Minus Query 29776 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 29835 |||||||| | ||| | ||| || |||| || ||||| || |||||| || || Sbjct 977496 CTGGGCTCACGCTCCAACTGCACTTTGAGCGCATCAACGTGGTCAGCGTAGACATGTGCA 977437 Query 29836 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29894 || |||| | ||| | ||| || || || | || | || | || ||||||| Sbjct 977436 TCGCCCATGACGTGCGTCAAGCTG-CCAGGGACGAGGTCACATGCGCGGGCAATCATGTG 977378 Query 29895 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 29954 ||| || || | |||||| |||||||| ||||| || ||||| ||||| || | |||| Sbjct 977377 CGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGGCCCATATCGCAGGACCG 977318 Query 29955 CTGGTAGAGCTGACACGAGAG---------------CTCTCCGTC--------------- 29984 |||||| |||||||| || ||||||||| Sbjct 977317 CTGGTACAGCTGACAGTGCAGGTGCCCCTTTGGCTTCTCTCCGTCAGCGGGTGCACCGCG 977258 Query 29985 -GCTC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 |||| ||||| ||||| | ||||| ||||| || || || ||||| Sbjct 977257 GGCTCGCGGGTAGGAGACGTAGAACTGCGCAAACATG---TGGCATGGCGGGAGGGCCAT 977201 Query 30030 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30089 | ||| ||||||||| |||| | || |||||| | ||| | || || | Sbjct 977200 CTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGATTCGT 977141 Query 30090 CCTGAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 30143 | | | || | || ||||| ||||| || || ||| |||| ||| || Sbjct 977140 CTTCAGCTTGTGGATGACCTCGGCG------AGCTGGTCGACGCCCTGGCCCGTGTAATC 977087 Query 30144 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCC 30203 | | | ||| ||||| || || || || | ||| ||||| ||||| || || || Sbjct 977086 CGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCC 977027 Query 30204 CAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30263 ||||| || |||| | |||| || || |||| | || || | || ||||| Sbjct 977026 GAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGCGAGCCGTT 976967 Query 30264 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGA 30322 | ||||||||||||| || ||| |||| || | |||| |||| ||||| || Sbjct 976966 GCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GA 976908 Query 30323 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAG 30380 |||||||||||||||| | | |||||| | || ||||| | ||| || || ||||| Sbjct 976907 CGAACCACAGCAGCTCAGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTAGTAAGGAG 976850 Query 30381 GGGAAAC 30387 ||| ||| Sbjct 976849 GGGCAAC 976843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408611125964900