Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq319 351 2e-91 seq58 140 6e-28 >seq319 Length=296375 Score = 351 bits (388), Expect = 2e-91 Identities = 894/1334 (67%), Gaps = 55/1334 (4%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAA-GACTGCGTCAGGGC 221424 || ||||||| || |||||| || | | | |||| | ||| ||| || ||||| Sbjct 227994 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGC 227936 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGA 221483 |||||||||||||||||| |||||| |||||||||| || | ||||||||||| || Sbjct 227935 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGG-TCGCGAGCCTCGGGAGACTCGA 227877 Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 |||||||||| || | | ||| | || || || ||||| || |||| ||||||||| | Sbjct 227876 AGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGC 227817 Query 221544 TGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 ||| | | ||||| | ||| | || ||| || || || |||||||||||| | Sbjct 227816 GGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGA-ACAGGGTAGTGGTTGACGTCGAT--G 227761 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 ||| | |||||| || ||| ||| |||| ||| | || ||| | || | Sbjct 227760 ATTCT----GTTCAGGTTGCGGAC---AACGACCTGGGTGACCTCGTGGAGCTT---CTG 227711 Query 221662 CAACTCGCCG---CCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || ||| | || |||| | | || ||||| | | ||||| | |||||| Sbjct 227710 GAAGTCGTAGACTCCCTCGTTGTAG---TCAACAAAGGTGGGCAGGGCGAGCGAGGCCAG 227654 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||| || || || ||||| || | |||| || ||||| || ||||||||| Sbjct 227653 GTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGA 227594 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 || ||| || || |||| || || || |||||| ||||| || ||||||||||| Sbjct 227593 GCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAG 227534 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| ||||| |||||||| ||| ||| | || || | |||||| | |||| | Sbjct 227533 CATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCT-TCTGAG 227475 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGAGCAT 221952 | ||| ||| ||| ||||| | ||| || ||| | ||| | || | Sbjct 227474 CCTTCATGGTC---TTGCG---ACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCT 227421 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 |||||| || ||||| ||| ||||||| || || | ||| ||||| ||| | Sbjct 227420 --CAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGT 227363 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||||| | || | | ||||||| |||||||||||| || ||||| || || | || Sbjct 227362 CCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAA 227303 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 || || | || || ||||||| ||||| ||| || | || |||||| || || || Sbjct 227302 AAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAA 227243 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 | || |||||||| ||||| || || | ||| | ||| ||||| |||||||||||||| Sbjct 227242 GACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 227183 Query 222193 CTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 ||| || | | | ||| | |||||||| || || | || || | ||||||| Sbjct 227182 CTGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGG 227124 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC---- 222307 | |||||| ||||| ||| || | ||| ||| | || | | || ||| Sbjct 227123 AGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGC---GGATGC-GGTGGACGTTG 227068 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 | || || |||||||| || |||||||||||||| ||||||| ||||| ||| Sbjct 227067 AGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATA 227008 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427 ||||| |||||||||||||| | || | || || ||||| |||| ||| | | | | Sbjct 227007 CCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGG 226948 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | || |||||| || || |||||| |||||| || ||| | || |||||||| | | Sbjct 226947 GTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTG 226888 Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTAC 222547 || || || | ||| | | | || ||| || || | |||| | |||| | Sbjct 226887 TAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATC 226828 Query 222548 ATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 |||| |||||| ||||| || || | |||| ||| ||||| ||| | |||| Sbjct 226827 ATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TGAGGAGGTATGATCTCTCCA 226770 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCA 222665 ||||||||| || ||||| | | || ||||| | | | | || | ||| | ||| | Sbjct 226769 AAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTCAA 226710 Query 222666 GCTCCGACTTGTGC 222679 |||| ||||||| Sbjct 226709 GCTCATCCTTGTGC 226696 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 228235 GTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGG 228176 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || |||||||||||||| |||||| | |||||||| || |||||||| || || Sbjct 228175 CTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGAC 228116 Query 221236 CAGCAGACTGTTGCG 221250 || ||| |||||| Sbjct 228115 GAGAAGAGAGTTGCG 228101 >seq58 Length=215898 Score = 140 bits (154), Expect = 6e-28 Identities = 343/521 (66%), Gaps = 21/521 (4%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||| | |||||| |||||| |||||||||| | | ||| | | Sbjct 121126 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCC 121185 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | | |||| || || ||||| || || || ||||| ||||| ||||||||| | || Sbjct 121186 TTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC 121245 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||||||||||||| || || |||||||| ||| ||| ||||||||| Sbjct 121246 GCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAG 121305 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 || ||| | || |||||||| |||| || || |||||||| |||||| | ||| Sbjct 121306 CTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTC---TCAC 121362 Query 26050 TTGCTCCACAA--ACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 ||| | || || |||| || | | | |||||| || ||||| || Sbjct 121363 ---CTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAG 121419 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 || ||| ||||||| | | ||||||||| || Sbjct 121420 ATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAAC 121479 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226 || |||| || |||||||||| ||| ||||||| || || || ||| |||| | Sbjct 121480 CTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCT-CT-TGGTTGCT----CTCGGC 121533 Query 26227 A--GAC----TCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAA 26280 | ||| |||||| | | ||||| || ||||| ||||| ||||| || ||| Sbjct 121534 AATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGC 121593 Query 26281 GGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 || ||||||||||||||||| ||| | || | |||||| || Sbjct 121594 GGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCA 121634 Score = 89.7 bits (98), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | ||| |||||||||||| |||||||| ||| Sbjct 120730 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACCTG 120789 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT-CTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| | | || ||| || | || || | Sbjct 120790 TCCAAGGATCTCCACGACTGGAACAATAAGATCAACGAGGATGAGAAGTACTTCATCTCG 120849 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || ||||| || || || || ||||| || |||| | Sbjct 120850 CACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGCGC 120909 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || ||| | |||||| || ||||| || ||||| || Sbjct 120910 TTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 120962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928829706272000