Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1269 134 4e-26 seq58 95.1 4e-14 seq118 91.5 4e-13 seq1253 86.0 2e-11 >seq1269 Length=112330 Score = 134 bits (148), Expect = 4e-26 Identities = 191/264 (72%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||||||| | || || ||||| ||||| || | Sbjct 102875 CTTGACGAGACGACGCTGGATGTAACCAGTTTCGGCAGTCTTGACAGCAGTATCGATCAA 102816 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| | |||||| |||| ||||||||||| | || | || ||| || || | | Sbjct 102815 ACCCTCTCGACCAGCCATGGCATGGAAGAAGAATTC-ACTGGGCGTAAGACCACGGAGGT 102757 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||||| |||||||||| || || |||||||| || | |||| |||||| || || || | Sbjct 102756 AGGAGTTCTCAACGAAGCCGCGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAATGCGGGA 102697 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | | || ||||| | || |||||||| || || ||| |||||||||| | | Sbjct 102696 GAGTGCGATACTTGAAGCCGAAGGGAATACGCTTACCCTCGACGATCTGCTGTCC--GAC 102639 Query 302822 ACGA--AATCATCTGCGAAATATT 302843 | || | ||||||| ||||| || Sbjct 102638 AAGAGCAGTCATCTGGGAAATGTT 102615 >seq58 Length=215898 Score = 95.1 bits (104), Expect = 4e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATT 133567 ||||||||||| || || | || ||||| || || ||||| ||||| ||| ||| || Sbjct 121195 CGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 121254 Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627 || ||||| || ||||||||| || | || || ||| || || ||||| || || || Sbjct 121255 TTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCT 121314 Query 133628 AGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || |||| ||||||||||| || ||| Sbjct 121315 CGTGATGAGGGTCTTCACACCGACTTCGCC 121344 >seq118 Length=94400 Score = 91.5 bits (100), Expect = 4e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||| |||||||||||||| ||||||||||| |||||||| || || Sbjct 65695 GCACCGTGGGCAATCATGCAATCACGCTCCATCTCACCGAAACGCAGACCACCGTCACGG 65636 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | ||||||| | ||||| Sbjct 65635 GCACGACCCTCGACGGGCTG 65616 >seq1253 Length=94166 Score = 86.0 bits (94), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556 |||| |||||| |||||||| || || |||||||||||||| ||||| | | ||| || Sbjct 88566 ATCAAACAATCGCGCTCCATCTCGCCCAAACGAAGACCACCGTCGCGGGATCGACCTTCC 88507 Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616 | ||||| || |||||| | || | ||||| ||| || || ||| || | Sbjct 88506 GTCGGCTGGCGGGTGAGAATGGCCCTGGGACCCCGGGAACGAGAGTGCATCTTGTCCTGA 88447 Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 ||||| ||||| || |||||||| | ||| ||| |||| ||| Sbjct 88446 ACCATGTGCTTCAGGCGCTGGTAATAGATGGGCCCGTTGAAAATG 88402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471793085038100