Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq381 152 8e-31 seq349 113 7e-19 seq58 111 2e-18 seq319 96.9 5e-14 >seq381 Length=144988 Score = 152 bits (168), Expect = 8e-31 Identities = 99/109 (91%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||||||||||||||||||||||||| | || ||||||||||| |||||| Sbjct 54076 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTTGGTTGCAAGACCGTTGCCAAC 54017 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 54016 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 53968 >seq349 Length=129046 Score = 113 bits (124), Expect = 7e-19 Identities = 203/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCG 2019204 |||||||| |||| |||||| | ||| | | ||||| || |||||| | | Sbjct 29740 GACGTCGTCCGTAACCGCATCAAAGGTTTCGC--CCAGAAGAAGGTCACCCTGCCCCAGG 29683 Query 2019205 GCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGG 2019264 ||||||||||| || | || |||||||| |||||| | | || || | ||||| || | Sbjct 29682 GCCGCCACAAGCTGGTGATTCTCGATGAAGCCGACAGTATGACATCAGGCGCCCAACAAG 29623 Query 2019265 CCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACA 2019324 | ||||| || ||||| | ||| ||||||| ||||| || || | |||||||| Sbjct 29622 CTCTCCGCCGAACGATGGAGATTTACTCCAACACTACGCGCTTCGCCTTCGCCTGCAATC 29563 Query 2019325 CGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCC 2019384 ||| | | ||||||| | || ||| || ||||||||| | || | || || | Sbjct 29562 AGTCCAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCATCCTCCGGTACGCCCGGC 29503 Query 2019385 TCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 ||||||||| ||| | | | ||| ||| |||| ||||| || || ||||| Sbjct 29502 TCACCGACGAGCAGGTGGTCAAGCGGCTGTTGCAGATCATCGAAGCGGAGAAGGT 29448 >seq58 Length=215898 Score = 111 bits (122), Expect = 2e-18 Identities = 179/253 (71%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | || ||| ||| || |||||||||||||| | | Sbjct 121648 TGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 121589 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | || ||||||| | | |||| ||| || |||| Sbjct 121588 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATTGCCGA 121529 Query 794011 GCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 | | | |||| ||||||||||| || || ||||||||||| ||| ||| || |||| Sbjct 121528 GAGCAACCAAG-AGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTC 121470 Query 794070 ATGCCGA--TGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 ||||||| |||||| | ||||| | |||| | | ||||| | ||| |||| ||| | Sbjct 121469 ATGCCGAGCAGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAG 121412 Query 794128 CCTCGATGATGAT 794140 | |||| |||||| Sbjct 121411 CATCGACGATGAT 121399 Score = 105 bits (116), Expect = 1e-16 Identities = 97/120 (81%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| |||||| ||||||| || | || | | || ||||||| |||||||||||| Sbjct 121061 GTGTCAATGGCGTTGAAGAGGTACGTGCG-CTGGGCAGGCTCCTTGATGTAGGTGTCGAT 121003 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| |||||||||||||| ||||||||||| || || ||| ||||||||||| ||||| Sbjct 121002 GAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAAGCCATAGAAGCA 120943 Score = 95.1 bits (104), Expect = 2e-13 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||||| |||||| ||| || |||||||| || || ||||| Sbjct 121326 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 121267 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| || ||| ||||| ||||| |||||||| || Sbjct 121266 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 121207 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC--CTCTTTGTTGATCCACTTCATCGCC 794517 | | ||||| |||| ||| || | ||| | ||| | | | |||||||||| ||| Sbjct 121206 GGCAACGAGACGCTGGGCGAAGG-----AGGACTTCTCATCGCTAATCCACTTCAGGGCC 121152 Query 794518 CACTCTGCCTTTTT 794531 || || ||||| || Sbjct 121151 CAGTCGGCCTTCTT 121138 >seq319 Length=296375 Score = 96.9 bits (106), Expect = 5e-14 Identities = 262/404 (65%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671 ||||| ||||||| ||||||||| | ||||| |||| ||||||| |||||| |||| Sbjct 227583 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 227524 Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAG 2071731 ||| |||||| |||| ||| || |||||| |||| | | | || || | Sbjct 227523 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCAT---G 227467 Query 2071732 GTCCT-CGCGCG--GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCG 2071788 ||| | || | |||| | | ||| ||||| | ||||| Sbjct 227466 GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCG 227407 Query 2071789 TGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC 2071848 | ||| ||| |||||| || ||| ||||| | ||| | |||||| || || Sbjct 227406 TAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTC 227347 Query 2071849 ACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGG 2071908 |||| | ||| || |||||| |||| ||| || || || || || || || Sbjct 227346 TCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGA 227287 Query 2071909 TTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCAC 2071968 ||||||||||||||||||||| || || | |||||| || ||||||||||| Sbjct 227286 ACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAA 227227 Query 2071969 GGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| ||||| ||| || || || ||||||| ||| || Sbjct 227226 GGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 227183 Score = 86.0 bits (94), Expect = 1e-10 Identities = 350/543 (64%), Gaps = 24/543 (4%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| ||||| |||| || |||| | | |||||||| ||||||||||| Sbjct 228582 TGGTCGACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCC 228523 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC-AT--TC 2069367 ||||| |||||| | ||| || | ||||| || || || | | || || Sbjct 228522 GTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTTAT---CTTGCCCATGGTC 228466 Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 ||| | || | |||||||||||| |||||||| ||| | |||||||| Sbjct 228465 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCA 228406 Query 2069428 GCCATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTG 2069484 ||||| | | | || |||| | || | |||||| || |||||| ||||||||||| Sbjct 228405 GCCATCTGCACAACAGT-ACGCTGC--GAGATCTCCCAAACAGTCTTGTACAGGGCCTTG 228349 Query 2069485 AGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGG 2069544 | | | || | | | | | | ||| | || || | | | || |||| | Sbjct 228348 ACCTCAGTAGGAATGTTGGGG------ATGTTCTGGATGGAACCGTTCTCGGCAATGATG 228295 Query 2069545 CGGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGC-- 2069602 |||| | | | | |||||| || | | | | | | || || | | | Sbjct 228294 CGGTTCTTCATGGCATCGGACCACAGACC-CATGTCGAC--GAGATCCTTCAAGAGCCAA 228238 Query 2069603 -GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATG 2069661 ||||||| || || || || | || || || ||| |||||||||| ||| | Sbjct 228237 GGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAG 228178 Query 2069662 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 2069721 ||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| Sbjct 228177 GGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCG 228118 Query 2069722 ACGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCC 2069781 ||||| || |||||||| | |||| ||| | | || || || || ||||||||| Sbjct 228117 ACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCC 228058 Query 2069782 CAG 2069784 ||| Sbjct 228057 CAG 228055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916108113070700