Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq84 107 1e-18 >seq84 Length=81435 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||||||||| || || ||||| || || |||||||| ||||| | | ||| || Sbjct 62189 ACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCC 62130 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || ||||| || | ||||| | ||||| || || ||||| |||||||| Sbjct 62129 GTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTT 62070 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| |||||| | || | || |||||| || || ||||| || | Sbjct 62069 GTCCTG-AATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGA 62011 Query 29750 TAGTTTTGCCAGT 29762 | || ||||| || Sbjct 62010 TGGTCTTGCCGGT 61998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385213096683300