Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq511 105 1e-17 seq84 87.8 4e-12 >seq511 Length=493796 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || ||||| || || || || ||||| || || || || | Sbjct 427643 TACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 427702 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || |||||||||||||| || | || || || || | Sbjct 427703 AGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGG 427762 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || ||||| || || || || || || | Sbjct 427763 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCA 427822 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | || | || || ||||| || || | ||||| || || |||||||| ||| Sbjct 427823 CCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGATT 427875 >seq84 Length=81435 Score = 87.8 bits (96), Expect = 4e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 82570 CCATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTA 82629 ||||| | || |||||| | || ||| || || | || || || || || ||||| | Sbjct 62442 CCATTGCTTACTGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGA 62383 Query 82630 TATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTT 82689 | || |||||| | | | ||| || || | || || ||||||||||| || | | Sbjct 62382 TGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCT 62323 Query 82690 GTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749 | || || ||||| || || ||||| || || ||||| | || || || || || || | Sbjct 62322 GCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGT 62263 Query 82750 CATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 | | ||| || || | || || |||||||| || | ||||| || || ||||||| Sbjct 62262 CTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCA 62203 Query 82810 T 82810 | Sbjct 62202 T 62202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981810846440700