Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq511 105 1e-17
seq84 87.8 4e-12
>seq511
Length=493796
Score = 105 bits (116), Expect = 1e-17
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || ||||| || ||||| || || || || ||||| || || || || |
Sbjct 427643 TACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 427702
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||||| || || || |||||||||||||| || | || || || || |
Sbjct 427703 AGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGG 427762
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || || ||||| | || ||||| || || || || || || |
Sbjct 427763 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCA 427822
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
| || | || || ||||| || || | ||||| || || |||||||| |||
Sbjct 427823 CCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGATT 427875
>seq84
Length=81435
Score = 87.8 bits (96), Expect = 4e-12
Identities = 164/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 82570 CCATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTA 82629
||||| | || |||||| | || ||| || || | || || || || || ||||| |
Sbjct 62442 CCATTGCTTACTGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGA 62383
Query 82630 TATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTT 82689
| || |||||| | | | ||| || || | || || ||||||||||| || | |
Sbjct 62382 TGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCT 62323
Query 82690 GTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749
| || || ||||| || || ||||| || || ||||| | || || || || || || |
Sbjct 62322 GCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGT 62263
Query 82750 CATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809
| | ||| || || | || || |||||||| || | ||||| || || |||||||
Sbjct 62262 CTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCA 62203
Query 82810 T 82810
|
Sbjct 62202 T 62202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981810846440700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |