Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq319 297 2e-75
seq511 122 8e-23
seq84 116 4e-21
seq58 111 2e-19
seq1288 109 5e-19
>seq319
Length=296375
Score = 297 bits (328), Expect = 2e-75
Identities = 1004/1544 (65%), Gaps = 51/1544 (3%)
Strand=Plus/Minus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || ||||| ||||| || || || || || ||| | || | |||| || | ||
Sbjct 228234 TTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 228175
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
||||| |||||||||||||||| ||||||| ||| | || || |||||| ||| ||
Sbjct 228174 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACG 228115
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
|| || |||||||| | |||| | | || || | ||||| ||| |||||||||||
Sbjct 228114 AGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG 228055
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499
|| ||| || | || ||||||||||| ||||| || ||||| | | | |||
Sbjct 228054 AGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAA 227995
Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-TCGCCTCGAGCGC 148558
|||||||||| ||| || || | | || ||||| | ||| | | ||| ||
Sbjct 227994 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGC 227936
Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC-CGACTCG---CTTT 148614
||| ||| || |||||| || | | ||||||| | ||| | |||| |
Sbjct 227935 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG----GTCGCGAGCCTCGGGAGACT 227880
Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674
|| | |||||||| || || || || || ||||| ||||| || || | || ||||
Sbjct 227879 CGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGG 227820
Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733
| ||||| |||||| | ||| || ||| || | || ||||||||| |||||||
Sbjct 227819 GGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGGTTGACGTCGATG 227761
Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792
|| ||| || ||||| || || |||| || | | | ||| | || |||||
Sbjct 227760 ATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAG 227701
Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844
|||| || || | | | || || ||||| ||||| || ||||| ||
Sbjct 227700 ACTCCCTCGTTGTAGTCAACAAAG-GTGGG--CAGGGCGAGCGAGGCCAGGTTGCAGACA 227644
Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATC 148904
|| |||||| || |||| |||||| | ||||| | ||| || ||| || |||
Sbjct 227643 GCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATA 227584
Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964
||| | |||||| || |||||||||| |||| || |||||||| |||||| | ||
Sbjct 227583 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 227524
Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACTT 149022
||||| || ||| | || | ||| | | | || | ||| || |||
Sbjct 227523 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCA--GAGCTTCTGAGC-----CTT 227471
Query 149023 GCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGC 149074
|| || | |||||||| ||||||||| | ||| | || ||| ||| |
Sbjct 227470 CATGGTC-TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC--CTCAAACTC 227414
Query 149075 CTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCC 149134
|||||||||||| ||| | || || ||||| | || ||||||||||| | ||| | ||
Sbjct 227413 CTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCC 227354
Query 149135 GTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCG 149194
| | | ||| | |||||| || || ||||| | |||||| ||| | ||||| ||
Sbjct 227353 ATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACG 227294
Query 149195 CGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGC 149254
|| || || ||| ||| ||||| | | | | ||| | || ||
Sbjct 227293 GGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGC 227234
Query 149255 GTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGAC 149311
|||||| ||||||| ||| | |||| || || |||| ||||| |||||||||||
Sbjct 227233 GTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGAC 227174
Query 149312 GTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTT 149371
|| ||| | ||||||| || || || | |||||| | | || ||| || |||||
Sbjct 227173 GTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTACCGTT 227114
Query 149372 AGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC 149431
|| | ||| |||| || || | ||| ||||||| || ||||| ||
Sbjct 227113 CGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCACC 227054
Query 149432 GCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGT 149490
| | ||| ||||| |||| |||| ||| || ||||| ||||| || ||
Sbjct 227053 GGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAGATACCCTCAATAGAGT 226995
Query 149491 CGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGA 149550
| ||||||| | || ||||| ||| ||| || | | | || ||||| ||
Sbjct 226994 CCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCGTTGA 226935
Query 149551 ACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGC 149609
| | ||||| |||||| || || | || || | ||||| | ||| | ||||
Sbjct 226934 AGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCG-ACATCAGGTTGTAGGTTTCGATG 226876
Query 149610 ACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGT 149669
||||| || | ||| || || ||| || | |||||| ||||| | ||| ||||| |||
Sbjct 226875 ACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGT 226816
Query 149670 CGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCA 149729
| ||| || | ||| ||| ||||| | ||| | || | |||||| ||||
Sbjct 226815 CTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGAAGCCG 226756
Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773
||||| | ||||| ||||||||| | | | | ||||| | |||
Sbjct 226755 AAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTC 226712
>seq511
Length=493796
Score = 122 bits (134), Expect = 8e-23
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||||||||| ||||| || ||||| ||| | ||| ||||||||||
Sbjct 427666 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGC 427725
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || || | || || ||||||||||| || |||||||| |||||||| ||||
Sbjct 427726 TGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 427785
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | || | ||||||| | |||||| || | ||||| || || ||
Sbjct 427786 TTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCC 427845
Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661
|| || || || ||||| |||||||||
Sbjct 427846 GTTAGGGTCTTGACGAAGATCTGCATG 427872
>seq84
Length=81435
Score = 116 bits (128), Expect = 4e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||||||||| ||||| || ||||| ||| || ||| |||||| |||
Sbjct 61895 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 61836
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| |||| || ||||||||||| || || ||||| |||||||| ||||
Sbjct 61835 TGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATC 61776
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
||| ||||| | || | || |||| || ||| || || | ||||| ||| ||||||
Sbjct 61775 TTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCG 61716
Query 133635 GT 133636
||
Sbjct 61715 GT 61714
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || |||||||| | || ||| ||| | ||||| | |||||| ||
Sbjct 62398 GTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCA-TCCTCCAACTGCTTACC 62340
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || || ||||||||||||||||| ||||| |||||||| |||||| |||
Sbjct 62339 AGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTT 62280
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||| | | || || || | ||| | || ||||| || || ||
Sbjct 62279 GACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGT 62220
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 62219 CTTGACGAAGATCTGCAT 62202
Score = 102 bits (112), Expect = 8e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||||||||| ||||| || ||||||||| || || |||||| |||
Sbjct 62179 AAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGC 62120
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| ||| | || | ||||||||||| || || ||||| || ||||| |||
Sbjct 62119 TGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATC 62060
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
||| ||||| | || | || || | | ||| || || | ||||| ||| ||||||
Sbjct 62059 TTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCG 62000
Query 133635 GTCAGAGTTTTTACGA 133650
|| || || || ||||
Sbjct 61999 GTAAGCGTCTTGACGA 61984
>seq58
Length=215898
Score = 111 bits (122), Expect = 2e-19
Identities = 159/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||||| || ||||| ||||| || ||||| || || || |||||||||||| || |||
Sbjct 121349 AGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTC 121290
Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759
|| |||||||| | || | |||||| |||| |||| ||| ||| || |||
Sbjct 121289 AGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 121230
Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819
|| | ||||| ||| ||| ||||| || | |||| ||| || | | | ||| |
Sbjct 121229 AAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCG 121170
Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863
|||||||||| |||||| |||||||| ||||| | ||| ||
Sbjct 121169 CTAATCCACTTCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGG 121126
>seq1288
Length=383550
Score = 109 bits (120), Expect = 5e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||||||||||||||| ||| | || | |||||||||||||| |||||||| |||||
Sbjct 214290 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 214231
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | |||||| | || ||| || || | ||| |
Sbjct 214230 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 214171
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652
||| || || ||||| || || ||||||
Sbjct 214170 GGTCTTACCCGTCAGGGTCTTCACGAAA 214143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483412944412000
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