Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq319 297 2e-75 seq511 122 8e-23 seq84 116 4e-21 seq58 111 2e-19 seq1288 109 5e-19 >seq319 Length=296375 Score = 297 bits (328), Expect = 2e-75 Identities = 1004/1544 (65%), Gaps = 51/1544 (3%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| ||||| || || || || || ||| | || | |||| || | || Sbjct 228234 TTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 228175 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||||||||||||||| ||||||| ||| | || || |||||| ||| || Sbjct 228174 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACG 228115 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 || || |||||||| | |||| | | || || | ||||| ||| ||||||||||| Sbjct 228114 AGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG 228055 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || ||| || | || ||||||||||| ||||| || ||||| | | | ||| Sbjct 228054 AGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAA 227995 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-TCGCCTCGAGCGC 148558 |||||||||| ||| || || | | || ||||| | ||| | | ||| || Sbjct 227994 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGC 227936 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC-CGACTCG---CTTT 148614 ||| ||| || |||||| || | | ||||||| | ||| | |||| | Sbjct 227935 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG----GTCGCGAGCCTCGGGAGACT 227880 Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674 || | |||||||| || || || || || ||||| ||||| || || | || |||| Sbjct 227879 CGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGG 227820 Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733 | ||||| |||||| | ||| || ||| || | || ||||||||| ||||||| Sbjct 227819 GGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGGTTGACGTCGATG 227761 Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792 || ||| || ||||| || || |||| || | | | ||| | || ||||| Sbjct 227760 ATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAG 227701 Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844 |||| || || | | | || || ||||| ||||| || ||||| || Sbjct 227700 ACTCCCTCGTTGTAGTCAACAAAG-GTGGG--CAGGGCGAGCGAGGCCAGGTTGCAGACA 227644 Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATC 148904 || |||||| || |||| |||||| | ||||| | ||| || ||| || ||| Sbjct 227643 GCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATA 227584 Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964 ||| | |||||| || |||||||||| |||| || |||||||| |||||| | || Sbjct 227583 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 227524 Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACTT 149022 ||||| || ||| | || | ||| | | | || | ||| || ||| Sbjct 227523 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCA--GAGCTTCTGAGC-----CTT 227471 Query 149023 GCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGC 149074 || || | |||||||| ||||||||| | ||| | || ||| ||| | Sbjct 227470 CATGGTC-TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC--CTCAAACTC 227414 Query 149075 CTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCC 149134 |||||||||||| ||| | || || ||||| | || ||||||||||| | ||| | || Sbjct 227413 CTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCC 227354 Query 149135 GTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCG 149194 | | | ||| | |||||| || || ||||| | |||||| ||| | ||||| || Sbjct 227353 ATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACG 227294 Query 149195 CGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGC 149254 || || || ||| ||| ||||| | | | | ||| | || || Sbjct 227293 GGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGC 227234 Query 149255 GTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGAC 149311 |||||| ||||||| ||| | |||| || || |||| ||||| ||||||||||| Sbjct 227233 GTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGAC 227174 Query 149312 GTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTT 149371 || ||| | ||||||| || || || | |||||| | | || ||| || ||||| Sbjct 227173 GTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTACCGTT 227114 Query 149372 AGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC 149431 || | ||| |||| || || | ||| ||||||| || ||||| || Sbjct 227113 CGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCACC 227054 Query 149432 GCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGT 149490 | | ||| ||||| |||| |||| ||| || ||||| ||||| || || Sbjct 227053 GGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAGATACCCTCAATAGAGT 226995 Query 149491 CGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGA 149550 | ||||||| | || ||||| ||| ||| || | | | || ||||| || Sbjct 226994 CCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCGTTGA 226935 Query 149551 ACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGC 149609 | | ||||| |||||| || || | || || | ||||| | ||| | |||| Sbjct 226934 AGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCG-ACATCAGGTTGTAGGTTTCGATG 226876 Query 149610 ACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGT 149669 ||||| || | ||| || || ||| || | |||||| ||||| | ||| ||||| ||| Sbjct 226875 ACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGT 226816 Query 149670 CGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCA 149729 | ||| || | ||| ||| ||||| | ||| | || | |||||| |||| Sbjct 226815 CTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGAAGCCG 226756 Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 ||||| | ||||| ||||||||| | | | | ||||| | ||| Sbjct 226755 AAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTC 226712 >seq511 Length=493796 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||| ||| | ||| |||||||||| Sbjct 427666 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGC 427725 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || ||||||||||| || |||||||| |||||||| |||| Sbjct 427726 TGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 427785 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||||| | |||||| || | ||||| || || || Sbjct 427786 TTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCC 427845 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| ||||||||| Sbjct 427846 GTTAGGGTCTTGACGAAGATCTGCATG 427872 >seq84 Length=81435 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||| ||| || ||| |||||| ||| Sbjct 61895 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 61836 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| || ||||||||||| || || ||||| |||||||| |||| Sbjct 61835 TGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATC 61776 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | || | || |||| || ||| || || | ||||| ||| |||||| Sbjct 61775 TTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCG 61716 Query 133635 GT 133636 || Sbjct 61715 GT 61714 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||| | || ||| ||| | ||||| | |||||| || Sbjct 62398 GTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCA-TCCTCCAACTGCTTACC 62340 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||||||||| ||||| |||||||| |||||| ||| Sbjct 62339 AGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTT 62280 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | || || || | ||| | || ||||| || || || Sbjct 62279 GACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGT 62220 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 62219 CTTGACGAAGATCTGCAT 62202 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||||||| || || |||||| ||| Sbjct 62179 AAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGC 62120 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || | ||||||||||| || || ||||| || ||||| ||| Sbjct 62119 TGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATC 62060 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | || | || || | | ||| || || | ||||| ||| |||||| Sbjct 62059 TTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCG 62000 Query 133635 GTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 61999 GTAAGCGTCTTGACGA 61984 >seq58 Length=215898 Score = 111 bits (122), Expect = 2e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| || ||||| ||||| || ||||| || || || |||||||||||| || ||| Sbjct 121349 AGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTC 121290 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||| | || | |||||| |||| |||| ||| ||| || ||| Sbjct 121289 AGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 121230 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | ||||| ||| ||| ||||| || | |||| ||| || | | | ||| | Sbjct 121229 AAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCG 121170 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||||||| |||||| |||||||| ||||| | ||| || Sbjct 121169 CTAATCCACTTCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGG 121126 >seq1288 Length=383550 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || | |||||||||||||| |||||||| ||||| Sbjct 214290 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 214231 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | || ||| || || | ||| | Sbjct 214230 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 214171 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 ||| || || ||||| || || |||||| Sbjct 214170 GGTCTTACCCGTCAGGGTCTTCACGAAA 214143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412944412000