Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq319 165 1e-34 seq58 140 5e-27 seq887 91.5 2e-12 >seq319 Length=296375 Score = 165 bits (182), Expect = 1e-34 Identities = 342/504 (68%), Gaps = 19/504 (4%) Strand=Plus/Plus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||| | || ||| |||||||| | | | ||| ||||| |||| ||||| Sbjct 226696 GCACAAGGATGAGCTTGACTCTGCCATCGTCTATGACCGCGACTTCAACTACCAATACTT 226755 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | ||| ||| | || ||||| ||| | || | | | |||| | Sbjct 226756 CGGCTTCAAGACTTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAG 226815 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| |||||||||||||| |||| | |||| || ||||| Sbjct 226816 ACCCCAGCACATGATCATGCGTGTCGCCGTTGG--TATCTGGG-GTGACGACG------- 226865 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGC-AGTTGTTCACCTCA- 259918 | |||| ||| ||| |||||| | |||||| ||| |||| |||| |||| Sbjct 226866 -----TTGAGCGCGTCATCGAAACCTACAACCTGATGTCG-AGCAAGTTCTTCA-CTCAC 226918 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | ||||| ||||| || ||||| || || | | ||| || || ||||| || Sbjct 226919 GCCTCTCCCACACTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTC 226978 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || || || ||||| ||||||||||| |||||| ||||| | Sbjct 226979 GTCGACATGAAGGAGGACTCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATG 227038 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||||||||| |||||| ||||| ||| | || ||| | |||||| | ||| | Sbjct 227039 ATCTCCAAGATGGCCGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCA 227098 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 || | || ||||| ||||| |||||||| | || || ||||| || || || ||| Sbjct 227099 TATATTGCCGGCACGAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAAC 227158 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| || ||||||||||||||| Sbjct 227159 AACACTGCTCGCTACGTCGACCAG 227182 Score = 89.7 bits (98), Expect = 7e-12 Identities = 349/545 (64%), Gaps = 24/545 (4%) Strand=Plus/Plus Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCT 262937 |||||||||||| || || || | | || ||||| || | |||||||| | || Sbjct 228055 CTGGGACTGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCT 228114 Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997 ||| |||| |||||| || |||| || ||||||||| ||||||||| |||| || || Sbjct 228115 CGTCGCGCCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGA 228174 Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAA 263057 | | ||| |||||||||| ||| || || || | || || || || ||||| Sbjct 228175 GCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAA 228234 Query 263058 CCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCG 263117 || || | ||| | || | || |||||| | | | | |||| Sbjct 228235 CCCTTGGCTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCG 228294 Query 263118 GCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCT 263177 ||||||| | | || || | ||| | | | || | || | || | Sbjct 228295 CATCATTGCCGAGAACGGTTCCATCCAGAACATCCCCAAC------ATTCCTACTGAGGT 228348 Query 263178 CAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATGGC 263234 |||||| || | |||||| || |||||| | | | || || ||| | ||||| Sbjct 228349 CAAGGCCCTGTACAAGACTGTTTGGGAGATCTCGCAGCG---TACTGTTGTGCAGATGGC 228405 Query 263235 GGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCC 263294 |||||||| | ||| |||||||| |||||||||||| | || | ||||| Sbjct 228406 TGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCC 228465 Query 263295 GAC---GGCCGAGAGCATCACGTCGATGCA---CGCCTATGCGTGGCGTCGCGGCCTCAA 263348 ||| || | || || || ||||| |||| | ||| | |||||| || Sbjct 228466 GACCATGGGCAAG---ATAACCAGCATGCATTTCGCC---GGCTGGAAGCTCGGCCTGAA 228519 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| ||||||||||| |||||||| | | | ||||| ||||||| ||||||||||| Sbjct 228520 GACGGGCATGTACTACCTGCGCACGCAGGCTGCTGCTGCTCCCATTCAGTTCACCGTCGA 228579 Query 263409 TCAGG 263413 |||| Sbjct 228580 CCAGG 228584 >seq58 Length=215898 Score = 140 bits (154), Expect = 5e-27 Identities = 239/340 (70%), Gaps = 15/340 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| || ||||||||||||||| | |||| Sbjct 120729 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACC 120787 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| | | | ||| || ||| | ||| Sbjct 120788 TGTCCAAGGATCTCCACG----ACTGGAACAATAAGATCAACGAGGATGAGAAGTACTTC 120843 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||| |||||||||| || |||||| || ||||| || |||||| ||| Sbjct 120844 ATCTCGCACATCCTCGCCTTCTT-CGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGT 120902 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | |||||||| | || ||||| |||| || || || ||||| || Sbjct 120903 CGAGCGCTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 120962 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || ||||||||||| || |||||||||||| ||||||| Sbjct 120963 CATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTACATCAAGGA 121022 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106 || | | || | || ||||||| |||||| ||||| Sbjct 121023 GCCTGCCCAG-CGCACGTACCTCTTCAACGCCATTGACAC 121061 Score = 111 bits (122), Expect = 2e-18 Identities = 182/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||||||||| || ||| |||| ||| | ||||| | | |||| | ||||| | ||| Sbjct 121399 ATCATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCC--TTGCG 121456 Query 1456583 CTC--ATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| ||||||||||| ||| | || ||| |||||||||| | ||||| |||||||| Sbjct 121457 CTCTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG-AGTTTGTTGCCGACCG 121514 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||| | | || |||||| || ||| |||| | | ||||||| || | | Sbjct 121515 CCTCTTGGTTGCTCTCGGC-AATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCA 121573 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| ||||| || | |||||||||||||| || ||| || | || ||| ||| Sbjct 121574 TGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACC 121633 Query 1456760 CCAAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 121634 AGAAGGCCGGTGTCA 121648 Score = 104 bits (114), Expect = 3e-16 Identities = 118/156 (76%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180 || |||||||||||||| |||||||||| | | | ||| | |||| ||| ||| | Sbjct 121138 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCCCA 121193 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| ||||| | ||| ||||| || ||||| ||||| ||| || ||| | |||| Sbjct 121194 GCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCAT 121253 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||| || || ||||||||||| Sbjct 121254 CTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCT 121289 >seq887 Length=251507 Score = 91.5 bits (100), Expect = 2e-12 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||| |||| || |||||||||||| |||| | ||||||||| | || || | ||| Sbjct 24596 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGCCTG 24537 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| || Sbjct 24536 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATCGACGC 24478 Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914 | | || | |||||| |||| |||| Sbjct 24477 CATCGGCGCCGCCGCC--GCCAAGCACC 24452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177685812610600