Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq319 165 1e-34
seq58 140 5e-27
seq887 91.5 2e-12
>seq319
Length=296375
Score = 165 bits (182), Expect = 1e-34
Identities = 342/504 (68%), Gaps = 19/504 (4%)
Strand=Plus/Plus
Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740
||||||||| | || ||| |||||||| | | | ||| ||||| |||| |||||
Sbjct 226696 GCACAAGGATGAGCTTGACTCTGCCATCGTCTATGACCGCGACTTCAACTACCAATACTT 226755
Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800
|| | ||| ||| | || ||||| ||| | || | | | |||| |
Sbjct 226756 CGGCTTCAAGACTTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAG 226815
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
|||||| | ||| |||||||||||||| |||| | |||| || |||||
Sbjct 226816 ACCCCAGCACATGATCATGCGTGTCGCCGTTGG--TATCTGGG-GTGACGACG------- 226865
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGC-AGTTGTTCACCTCA- 259918
| |||| ||| ||| |||||| | |||||| ||| |||| |||| ||||
Sbjct 226866 -----TTGAGCGCGTCATCGAAACCTACAACCTGATGTCG-AGCAAGTTCTTCA-CTCAC 226918
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
|| | ||||| ||||| || ||||| || || | | ||| || || ||||| ||
Sbjct 226919 GCCTCTCCCACACTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTC 226978
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| |||||||||| || || || ||||| ||||||||||| |||||| ||||| |
Sbjct 226979 GTCGACATGAAGGAGGACTCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATG 227038
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
||||||||| |||||| ||||| ||| | || ||| | |||||| | ||| |
Sbjct 227039 ATCTCCAAGATGGCCGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCA 227098
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
|| | || ||||| ||||| |||||||| | || || ||||| || || || |||
Sbjct 227099 TATATTGCCGGCACGAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAAC 227158
Query 260159 GACACGGCGCGCTACGTCGACCAG 260182
|||| || |||||||||||||||
Sbjct 227159 AACACTGCTCGCTACGTCGACCAG 227182
Score = 89.7 bits (98), Expect = 7e-12
Identities = 349/545 (64%), Gaps = 24/545 (4%)
Strand=Plus/Plus
Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCT 262937
|||||||||||| || || || | | || ||||| || | |||||||| | ||
Sbjct 228055 CTGGGACTGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCT 228114
Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997
||| |||| |||||| || |||| || ||||||||| ||||||||| |||| || ||
Sbjct 228115 CGTCGCGCCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGA 228174
Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAA 263057
| | ||| |||||||||| ||| || || || | || || || || |||||
Sbjct 228175 GCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAA 228234
Query 263058 CCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCG 263117
|| || | ||| | || | || |||||| | | | | ||||
Sbjct 228235 CCCTTGGCTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCG 228294
Query 263118 GCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCT 263177
||||||| | | || || | ||| | | | || | || | || |
Sbjct 228295 CATCATTGCCGAGAACGGTTCCATCCAGAACATCCCCAAC------ATTCCTACTGAGGT 228348
Query 263178 CAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATGGC 263234
|||||| || | |||||| || |||||| | | | || || ||| | |||||
Sbjct 228349 CAAGGCCCTGTACAAGACTGTTTGGGAGATCTCGCAGCG---TACTGTTGTGCAGATGGC 228405
Query 263235 GGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCC 263294
|||||||| | ||| |||||||| |||||||||||| | || | |||||
Sbjct 228406 TGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCC 228465
Query 263295 GAC---GGCCGAGAGCATCACGTCGATGCA---CGCCTATGCGTGGCGTCGCGGCCTCAA 263348
||| || | || || || ||||| |||| | ||| | |||||| ||
Sbjct 228466 GACCATGGGCAAG---ATAACCAGCATGCATTTCGCC---GGCTGGAAGCTCGGCCTGAA 228519
Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408
||| ||||||||||| |||||||| | | | ||||| ||||||| |||||||||||
Sbjct 228520 GACGGGCATGTACTACCTGCGCACGCAGGCTGCTGCTGCTCCCATTCAGTTCACCGTCGA 228579
Query 263409 TCAGG 263413
||||
Sbjct 228580 CCAGG 228584
>seq58
Length=215898
Score = 140 bits (154), Expect = 5e-27
Identities = 239/340 (70%), Gaps = 15/340 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||| |||||||| || ||||||||||||||| | ||||
Sbjct 120729 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACC 120787
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| | | | ||| || ||| | |||
Sbjct 120788 TGTCCAAGGATCTCCACG----ACTGGAACAATAAGATCAACGAGGATGAGAAGTACTTC 120843
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| |||| |||||||||| || |||||| || ||||| || |||||| |||
Sbjct 120844 ATCTCGCACATCCTCGCCTTCTT-CGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGT 120902
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
|| ||||| | |||||||| | || ||||| |||| || || || ||||| ||
Sbjct 120903 CGAGCGCTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 120962
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || ||||||||||| || ||||||||||| || |||||||||||| |||||||
Sbjct 120963 CATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTACATCAAGGA 121022
Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106
|| | | || | || ||||||| |||||| |||||
Sbjct 121023 GCCTGCCCAG-CGCACGTACCTCTTCAACGCCATTGACAC 121061
Score = 111 bits (122), Expect = 2e-18
Identities = 182/255 (71%), Gaps = 8/255 (3%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
||||||||||| || ||| |||| ||| | ||||| | | |||| | ||||| | |||
Sbjct 121399 ATCATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCC--TTGCG 121456
Query 1456583 CTC--ATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640
||| ||||||||||| ||| | || ||| |||||||||| | ||||| ||||||||
Sbjct 121457 CTCTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG-AGTTTGTTGCCGACCG 121514
Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700
||| | | || |||||| || ||| |||| | | ||||||| || | |
Sbjct 121515 CCTCTTGGTTGCTCTCGGC-AATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCA 121573
Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759
||||| ||||| || | |||||||||||||| || ||| || | || ||| |||
Sbjct 121574 TGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACC 121633
Query 1456760 CCAAGGCCGGCGTCA 1456774
|||||||| ||||
Sbjct 121634 AGAAGGCCGGTGTCA 121648
Score = 104 bits (114), Expect = 3e-16
Identities = 118/156 (76%), Gaps = 7/156 (4%)
Strand=Plus/Plus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180
|| |||||||||||||| |||||||||| | | | ||| | |||| ||| ||| |
Sbjct 121138 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCCCA 121193
Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239
||| ||||| | ||| ||||| || ||||| ||||| ||| || ||| | ||||
Sbjct 121194 GCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCAT 121253
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| |||||||||||||| || || |||||||||||
Sbjct 121254 CTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCT 121289
>seq887
Length=251507
Score = 91.5 bits (100), Expect = 2e-12
Identities = 111/148 (75%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|||||| |||| || |||||||||||| |||| | ||||||||| | || || | |||
Sbjct 24596 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGCCTG 24537
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886
| | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| ||
Sbjct 24536 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATCGACGC 24478
Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914
| | || | |||||| |||| ||||
Sbjct 24477 CATCGGCGCCGCCGCC--GCCAAGCACC 24452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177685812610600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |