Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq511 122 8e-23
seq84 111 1e-19
seq1288 102 7e-17
>seq511
Length=493796
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || ||||| || | || |||||| || |||||||| ||||
Sbjct 427645 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 427704
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || |||||||| || ||||| |||| ||||||||||| | ||
Sbjct 427705 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 427764
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||| | | | | | |||||| || ||||||
Sbjct 427765 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 427824
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || |||||||| | || || || || ||||||||
Sbjct 427825 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 427871
>seq84
Length=81435
Score = 111 bits (122), Expect = 1e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||||||||| |||||| || | || |||| ||||||||| |||||
Sbjct 62393 CTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAA 62334
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | ||||| || |||||||||| |||||| ||| | ||
Sbjct 62333 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 62275
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||| |||||| ||||| | || || || || || || | || || |
Sbjct 62274 TGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGA 62215
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 62214 CGAAGATCTGCAT 62202
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || |||||| || | || |||||| |||||||||||||||| |
Sbjct 62200 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 62141
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || |||||||| || || || ||||| ||||||||||| | |||
Sbjct 62140 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 62081
Query 35630 ACGCTCTCCTTGTCCATGATCTTT 35653
| || ||| |||||| ||||||
Sbjct 62080 ATGCCCTCTTTGTCCTGAATCTTT 62057
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||| || |||| || |||||||| || || ||
Sbjct 61881 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAA 61822
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | |||| || |||||||||| ||||||| ||| | | |
Sbjct 61821 AATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATT 61762
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
| | || ||| || || ||||| | ||||| || || || ||
Sbjct 61761 GTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 61714
>seq1288
Length=383550
Score = 102 bits (112), Expect = 7e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | ||| || |||| || |||||||| || || || |
Sbjct 214324 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 214265
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
|||| ||||||||||| | || | || |||||||||| |||||| ||| | | |
Sbjct 214264 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 214205
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | |||||| || || ||||| | || || || |||||||||| || ||||| |
Sbjct 214204 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 214145
Query 35727 A 35727
|
Sbjct 214144 A 214144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450786274604000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |