Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq319 86.0 5e-12
>seq319
Length=296375
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822
|| || |||||||| || || || | ||| |||||| ||| | || |||||| |
Sbjct 228225 TGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCAC 228166
Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882
||||||||||| || || || | || | || || |||||| || || | |||||
Sbjct 228165 TCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAG 228106
Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942
|| || | ||||||| | | || | |||||| ||||||| ||||| ||| |
Sbjct 228105 TTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAGATCCGAG 228046
Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCC 130980
|| |||||| |||||||| ||| | || || |||||
Sbjct 228045 GGCTTGACA---TTCCACATGTCATACTGGAGGATGCC 228011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424927667445600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |