Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq319 215 6e-51 seq58 105 8e-18 >seq319 Length=296375 Score = 215 bits (238), Expect = 6e-51 Identities = 987/1535 (64%), Gaps = 49/1535 (3%) Strand=Plus/Minus Query 110575 GATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAG 110634 ||| |||||||||||||| | | | ||| | | |||||| | | |||||| || Sbjct 228328 GATGTTCTGGATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAG 228269 Query 110635 ACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAG 110694 ||| || | ||| || || | ||| |||||||| |||||||| || || Sbjct 228268 ACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAG 228209 Query 110695 GGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGAT 110754 | | | |||||||||| | ||||| || |||||||| || || || |||||||| Sbjct 228208 AACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGAT 228149 Query 110755 TTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTC 110814 || | |||| ||| || ||||| || || | | |||| ||| || | ||| | || Sbjct 228148 CTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTG 228089 Query 110815 CTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCAC 110872 ||| || | ||||| | | |||||||||| || || | || || || || |||| Sbjct 228088 CTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG-AGATCCGAGGGCTTGACATT-CCAC 228031 Query 110873 ATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCT 110932 |||||| |||| || | || || || | || |||||||| | || | |||| || Sbjct 228030 ATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCC 227971 Query 110933 TGGGCTTCAGCCA-ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGAT 110991 | | | |||| | ||| | | |||| ||||| || ||||| || ||||| Sbjct 227970 TCCTCCTTGGCCAGCTGCACCG-ACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGAT 227912 Query 110992 ACGAGCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATA 111050 || | || || || || || || || || ||| | || Sbjct 227911 CTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATA-CGGAGAGCCAGGAAGG 227853 Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || ||||| || ||||| | ||| || || | ||| ||||| || || || | Sbjct 227852 CATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAG 227793 Query 111111 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 111170 | || ||| || || || ||| |||| || ||| || || | ||| | || Sbjct 227792 CCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCT 227733 Query 111171 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG------ACAT 111224 |||| || || || || | | || || || || | || ||| ||| Sbjct 227732 GGGTGACCTCGTGGAGCTTCTGGAAGTC----GT-AGACTC-CCTCGTTGTAGTCAACAA 227679 Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 | | || ||||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 227678 AGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACT 227619 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | ||| || || || | |||||| || || || || | ||||| ||||| |||| Sbjct 227618 CGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCT 227559 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 | |||| |||||||||||||||||| |||| | || ||||| ||||| | | || Sbjct 227558 TGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGA 227499 Query 111405 GAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCC 111460 | || || | ||| | | || | | || |||| ||| | || | ||| | | Sbjct 227498 GGATGGCATACCAGAGCTTCTGAGCCT----TCATGGTCTTGCGACCCTTGCCCATCTGC 227443 Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC 111520 |||||||| ||| | ||| ||||||||||| || ||||| || || || || Sbjct 227442 TCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG-GCA 227384 Query 111521 TT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 || || || || | |||| ||| | ||| | ||| |||| ||||||||| ||||| Sbjct 227383 TTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTC 227324 Query 111580 TGGAATCCACAGG--GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTG 111637 |||||||| ||| || |||| || || | ||| |||| || | || ||||| Sbjct 227323 GGGAATCCAGAGGGCGAGGAAA--AGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTC 227266 Query 111638 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 111697 || || || | ||| || | || ||| |||||||| |||||||| || | |||| | Sbjct 227265 TTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAA 227206 Query 111698 GATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCG 111753 | || | | | | ||| | || | || ||||| || ||| ||| || || || Sbjct 227205 GCACCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACG 227147 Query 111754 AAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGC 111813 ||||| || | | ||| | || ||| || || || |||| || |||| Sbjct 227146 GAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGC 227087 Query 111814 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACAC 111871 | | |||| || | ||||| || || ||| ||| ||||| | ||||| | Sbjct 227086 GCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AG 227028 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || |||||||||| | || ||||||||||| || ||| ||||||||| Sbjct 227027 T-CTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAA 226969 Query 111932 CTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 ||||| ||| || || || ||||| || |||||||| || || | |||||| ||| Sbjct 226968 GAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGA- 226911 Query 111991 CATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 | | |||| |||||| || ||| || || | ||| |||| ||| || || | Sbjct 226910 -AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAG 226852 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || || | ||||| ||||||| ||||| ||| || Sbjct 226851 ATACCAACGGCGACACGCATGATCATGTGCTGGGG 226817 >seq58 Length=215898 Score = 105 bits (116), Expect = 8e-18 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| ||||||||||| || || || || || || |||||| ||||| ||||| ||||| Sbjct 121332 GTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACC 121273 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | | ||| | ||| ||||||||||||||| || Sbjct 121272 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 121213 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCAT 122846 || || |||| || || | |||||||||| ||||| |||| || ||| |||| Sbjct 121212 GGCGAAGGCAACGAGACGCTGGGCGAAGGAG---GACTTCTCATCGCTAATCCACTTCAG 121156 Query 122847 TGCCCATTTCGCCTTCTT 122864 ||||| | |||||||| Sbjct 121155 GGCCCAGTCGGCCTTCTT 121138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628021794480000