Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq319 316 3e-81 seq58 138 1e-27 >seq319 Length=296375 Score = 316 bits (350), Expect = 3e-81 Identities = 1183/1834 (65%), Gaps = 47/1834 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||||||||| || |||| | || ||||||||||| |||||||| || | Sbjct 228572 TGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGC 228513 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| | | |||||| || | |||| | ||| || | |||| Sbjct 228512 CGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTCGGGTCCTTCATGT 228453 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | ||| | || || || ||||||||| || || || || ||||| | | | Sbjct 228452 GAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAA 228393 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 || | | ||| ||||| |||||| |||| ||| ||| | ||| || || | Sbjct 228392 CAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGT 228333 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 118101 ||| || |||||||| ||| || | | |||| | | |||||| | | | Sbjct 228332 TGGGGATGTTCTGGATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGG 228276 Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161 |||| ||||| || | |||||||| || ||| |||||||| ||||||| Sbjct 228275 ACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCAC 228216 Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221 | || || || | | | ||||| |||| ||||| |||||||||||||| ||||| | Sbjct 228215 CAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGC 228156 Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281 ||||||| || | ||| ||| || |||||||| || | |||||| ||| |||| || Sbjct 228155 CCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACAC 228096 Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341 | | | | |||| | ||||| | ||| |||||||| || | | || | | Sbjct 228095 CGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAGATCCGAGGGCTTGACAT 228036 Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 |||||| ||| |||||||||| || || || | || || ||||| | |||| || | Sbjct 228035 TCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 227976 Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 ||||||| ||| |||| | | || | | |||||| ||||| || || || | Sbjct 227975 GGCCCTCCTCCTTGGCCAGCTGCACCGACATGGT---GAGGGCAGCGTGGTAGATGGTCT 227919 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAA 118518 | || || || | | |||||| || || || | | ||| | Sbjct 227918 CGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCA 227859 Query 118519 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 118578 || |||| || ||||| ||||||||||| || || ||||| || | ||| || | Sbjct 227858 GGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGT 227799 Query 118579 TCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638 | ||||| || || || || || ||||| | || || || || | | Sbjct 227798 TGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAA 227739 Query 118639 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTG--- 118694 | |||| |||| || || ||||| | | | || | ||| | ||| | | | Sbjct 227738 CGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACTCC----CTCGTTGTAGTCA 227683 Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 ||| | | || ||||||| || ||||| || || |||| | |||||| | | Sbjct 227682 ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAG 227623 Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 ||||| ||||| |||||||| | ||| || || || ||||| | |||||| || || Sbjct 227622 TACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTG 227563 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 ||| ||| ||||||||||| |||||| | || | || ||||| || |||| | Sbjct 227562 CTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCC 227503 Query 118875 TTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGG----CTCGCCCCT 118929 | ||| || || | ||||| | || | ||| || ||| ||| || |||| | Sbjct 227502 TCGAGGATGGCATACCAGAGCTTCTG-AGCCTTCA---TGGTCTTGCGACCCTTGCCCAT 227447 Query 118930 CTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTG 118989 || | |||||||| ||| | ||| |||||||| || || | || | || || | Sbjct 227446 CTGC-TCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAG 227388 Query 118990 GTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 | || || |||| || | ||||| ||| | ||| || ||| |||| |||||||||| Sbjct 227387 G-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAG 227329 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108 ||||| || |||||||| || ||| || || || |||| | || || | || || Sbjct 227328 AGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGG 227269 Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168 || ||||| ||||| ||||| | || ||| |||||||| || || ||||| | ||| Sbjct 227268 TTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCG 227209 Query 119169 ATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 | | || | ||| | | ||| |||||| || || | |||||| ||| || Sbjct 227208 AAAGCACCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 227152 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTA 119282 ||||| ||||| || | || ||| | ||| || || || || |||| || Sbjct 227151 ACACGGAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCG 227092 Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342 |||| | || ||||| || | |||||| || || ||| ||| ||||| ||| Sbjct 227091 GTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCG 227032 Query 119343 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 119402 || | |||| || | ||||| || || || ||||| |||| | ||| ||||||| Sbjct 227031 CAAGTCTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAG 226972 Query 119403 CAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGAT 119461 || |||| || |||||| || ||||| ||||||||||| || || | ||||| | Sbjct 226971 CAAGAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGT 226913 Query 119462 GAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 119519 || | | |||| |||||| || |||||| || | |||| || ||| || || Sbjct 226912 GA--AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCC 226855 Query 119520 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 119579 ||||| | | ||| ||||| | ||||| |||||| | || | | || || Sbjct 226854 CAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCA 226795 Query 119580 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 ||| | ||||||| ||||||| ||||||| Sbjct 226794 AGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGA 226761 >seq58 Length=215898 Score = 138 bits (152), Expect = 1e-27 Identities = 346/519 (67%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| |||||||| |||||||| ||||| ||| ||| | ||| |||||||| Sbjct 121631 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 121572 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || ||||| ||||| || || | | || || | || | | ||| || Sbjct 121571 AAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCATTGCCGAGAGCAACCAAGAGGCG 121513 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | || |||||||||||| |||| | ||||||||| |||| || || Sbjct 121512 GTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGCA 121453 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| ||| |||||| | ||||| || | |||| | | Sbjct 121452 AGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACGATGATGTCCTC 121393 Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 |||| || | ||| || | | ||| | || | || ||| || ||| || || Sbjct 121392 AATGACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAG--GCA-GGCGAAGTC 121336 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||| ||||| ||||| || || || |||||| |||||| ||||| || Sbjct 121335 GGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAG 121276 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | || ||||||||| ||||| || Sbjct 121275 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAAC 121216 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200 ||||| |||| |||||||| || ||||| |||||| ||| || |||||| Sbjct 121215 GGCGGCGAAGGCAACGAGACGCTGGGCGAAGGA---GGACTTCTCATCGCTAATCCACTT 121159 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 || ||||| | ||||| || ||| || || || || Sbjct 121158 CAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGAACTGT 121120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425150428000