Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq319 293 3e-74
seq58 143 3e-29
>seq319
Length=296375
Score = 293 bits (324), Expect = 3e-74
Identities = 976/1496 (65%), Gaps = 33/1496 (2%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || ||| | ||||| || || ||| |||| |||
Sbjct 226817 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 226876
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| || || ||| || |||||| |||| | | ||| |||||| | || || ||||
Sbjct 226877 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCCACACTCT 226934
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || ||||| || |||| ||||| ||||||||| ||| || |||||||
Sbjct 226935 TCAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGG 226994
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457
|||| || | |||||||||| || || | | | | ||||| | ||||| ||| |||
Sbjct 226995 ACTCTATTGAGGGTATCTATGACACCCTCAAG-ACT-TGCGCCATGATCTCCAAGATGGC 227052
Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517
|| || ||||| | || |||| | | |||| || |||| || ||
Sbjct 227053 CGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCAC 227112
Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577
|| ||| || | ||| | | || ||||| || || || ||| ||| || |||||
Sbjct 227113 GAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTA 227172
Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
|| | || | ||| | | | | || || |||| | || |||||||| ||||
Sbjct 227173 CGTCGACCAGGGTGG-CAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGC 227231
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|||| ||| || | || ||| | || ||||| ||||| || | ||||||| ||
Sbjct 227232 ACGCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCG 227291
Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753
||| || || ||| ||| ||||||||||| || |||||||||||||| || ||| |||
Sbjct 227292 CCCGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGA 227351
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812
||| | ||| ||||| | || || || || || ||||| || |||| | ||
Sbjct 227352 ATGGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTACGGC 227410
Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGG 104870
||||||||||| ||| | ||| ||||||||| | || || | | | | || |||
Sbjct 227411 GAGGAGTTTGAGGCCTTGTACGAGAAGTACGAGCA-GATGGGCAAGGGTC-GCAAGACCA 227468
Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929
|| ||| | || | | ||| | || || ||| || | || ||||||||||||| ||
Sbjct 227469 TGAAGGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCC 227527
Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989
| |||||| ||||| || ||| |||| ||||| || || ||||| | || |||
Sbjct 227528 TTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATC 227587
Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049
|| ||||| ||||| || || || | || | | |||||| |||||
Sbjct 227588 CGCAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTC 227647
Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGA 105108
|| ||||| || || |||| || |||| | ||| || | || || || | | ||
Sbjct 227648 TGCAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTC-TACGA 227706
Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168
| | || |||||||| || || | || | ||||| |||||| | || ||
Sbjct 227707 CTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATCGA 227766
Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228
|| ||||| ||| || ||||| || || ||| | ||||| || || ||
Sbjct 227767 CGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATCGG 227826
Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTC 105285
||||||||| |||||||| || |||| ||| | ||| || | | || || ||
Sbjct 227827 TCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGC---CCTTCGAGTC 227883
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC--CGCTCTT 105343
||| || || |||| | || || |||||||| || ||||| | |||
Sbjct 227884 TCCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCAC 227943
Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403
| | || | || |||| ||| || || || || | || | |||||||| ||
Sbjct 227944 CATGTCGGTGC--AGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCT 228001
Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463
| ||| || || | || || | ||| |||||| | | || || | || || |||
Sbjct 228002 GTTTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGAC 228061
Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523
||||| ||| | ||||| | || ||| || | ||| | || ||| ||| ||| | ||
Sbjct 228062 TGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCG 228121
Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583
|| ||||| || ||| |||| | || |||||||| || || || |||||||| ||||||
Sbjct 228122 CCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTAC 228181
Query 105584 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 105643
|| | |||||||| | | | | || || || ||||| | ||||||||
Sbjct 228182 ACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGG 228241
Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 105699
||| || | || ||| || || ||||| |||||| | | |||||| | | |||
Sbjct 228242 CTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCAT 228297
>seq58
Length=215898
Score = 143 bits (158), Expect = 3e-29
Identities = 168/225 (75%), Gaps = 9/225 (4%)
Strand=Plus/Plus
Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 94779
|||||| |||||||| || || | ||||| || || ||||| |||||||| ||
Sbjct 121114 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGC 121170
Query 94780 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 94839
||| ||||| ||||| || |||| ||| | || || || ||||||||||||
Sbjct 121171 GATGAGAAGTCC---TCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATC 121227
Query 94840 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 94899
|||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| |||
Sbjct 121228 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGT 121287
Query 94900 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|| ||||||||||||||| ||||||||||| ||||| || |||
Sbjct 121288 CTGACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCAC 121332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583251322012000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |