Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq84 134 4e-26 seq511 120 9e-22 seq729 111 5e-19 seq1269 86.0 2e-11 >seq84 Length=81435 Score = 134 bits (148), Expect = 4e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || ||||||||||| || ||||| || || || || || Sbjct 62435 TTACTGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTA 62376 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 |||| || || || ||||| || | || || ||||||||||| ||||| ||||| || Sbjct 62375 ATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTC 62316 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 |||||||| || || || ||||| || || | || || || || || | || || | Sbjct 62315 GGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGA 62256 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| |||| ||||| || || || || || || || |||||||| Sbjct 62255 TTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || ||||| || ||||| Sbjct 62204 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 62145 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || || || ||||| | || ||||| ||||| Sbjct 62144 GGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGG 62085 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || ||||| |||||||| || | || ||||| || || | |||||| | || Sbjct 62084 GGGAATGCCCTCTTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTC 62025 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| ||||| || | ||||| ||||| || || || || Sbjct 62024 AACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 61986 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | ||||| || ||||| || || || || || || Sbjct 61920 CATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 61861 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || ||||| || || || || || ||||| ||||| Sbjct 61860 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGG 61801 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || ||||| || || | ||| || | || Sbjct 61800 GGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTC 61741 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || | ||||| ||||| Sbjct 61740 GACCTCAAGGGTGATGGTCTTGCCGGT 61714 >seq511 Length=493796 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 427641 CATACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 427700 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || |||||||||||||| || || ||||| ||||| Sbjct 427701 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGG 427760 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 427761 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTC 427820 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || ||||| || || || || |||||||| Sbjct 427821 CACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 427871 >seq729 Length=525681 Score = 111 bits (122), Expect = 5e-19 Identities = 435/674 (65%), Gaps = 10/674 (1%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| || ||||| |||||||| |||||||| || || || | ||| || || || || Sbjct 297160 GAAATCATCGCAAACGATCAAGGAAACAGAACCACACCGTCTTTCGTCGCCTTCACGGAC 297219 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| || ||| | || || || || | || || || | || ||| Sbjct 297220 ACGGAGCGTCTGATCGGCGATGCGGCCAAGAACCAGGTGGCGATGAACCCGCACAACACG 297279 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGA 349440 || || || || ||||| || || || | ||||| | ||| || | || Sbjct 297280 GTGTTCGACGCCAAGCGCCTGATCGGGCGCAAGTTCAAC-GACCCGGAGGTGCAGGCCGA 297338 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGA-CGGTGATAAACCAATTATTGAGG 349499 | || || || || || | || || | | |||| ||| || || | || |||| Sbjct 297339 CATGAAGCACTTCCCGTTCAAGGTGGT-CGACAAGAACGGC---AAGCCCAACATCGAGG 297394 Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 | || | || || || || || || || ||||| || || || | ||||| | Sbjct 297395 TCGAGTTCAAGGGCGAGACCAAGACG-TTCACGCCCGAGGAGATCTCGGCCATGGTCCTG 297453 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || ||| || | ||| || || | | |||| || | | || || | Sbjct 297454 GTCAAGATGCGCGAGACTGCCGAGGCTTTCCTCGGTGGCCAGGTCAACAACGCCGTCGTC 297513 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || |||||||| || || || || || || |||| Sbjct 297514 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATT 297573 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || ||||| || || || || || || || Sbjct 297574 GCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGC 297633 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | | || || || |||| || || ||| | ||||||||||| Sbjct 297634 CTGGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTCGGTGGTGGTACC 297693 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | || |||||| Sbjct 297694 TTCGATGTGTCCCTCCTGACCATTGAGGAGGGCATCTTCGAGGTCAAGTCCACCGCTGGT 297753 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || || ||||| || || || || || Sbjct 297754 GACACCCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCGTCAACGAG 297813 Query 349919 TTTAAGCGTCAAGC 349932 || ||||| ||||| Sbjct 297814 TTCAAGCG-CAAGC 297826 >seq1269 Length=112330 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| || || | |||||| || || ||||| || || Sbjct 103651 CGAGGGACACCAAGCGTGACGTTC---TTGGAAGAAACACCGGCGAAATGGAATGTGTTC 103595 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| |||||||| || || ||||| || Sbjct 103594 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATGACACCGACCATCTCA 103535 Query 377578 CCAGGATTGAC 377588 ||||| |||| Sbjct 103534 CCAGGGCTGAC 103524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515229161543900