Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq84 134 4e-26
seq511 120 9e-22
seq729 111 5e-19
seq1269 86.0 2e-11
>seq84
Length=81435
Score = 134 bits (148), Expect = 4e-26
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | || ||||||||||| || ||||| || || || || ||
Sbjct 62435 TTACTGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTA 62376
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
|||| || || || ||||| || | || || ||||||||||| ||||| ||||| ||
Sbjct 62375 ATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTC 62316
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
|||||||| || || || ||||| || || | || || || || || | || || |
Sbjct 62315 GGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGA 62256
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || ||||| |||| ||||| || || || || || || || ||||||||
Sbjct 62255 TTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202
Score = 125 bits (138), Expect = 2e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || || || ||||| || ||||| || |||||
Sbjct 62204 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 62145
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || || || ||||| | || ||||| |||||
Sbjct 62144 GGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGG 62085
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || ||||| |||||||| || | || ||||| || || | |||||| | ||
Sbjct 62084 GGGAATGCCCTCTTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTC 62025
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||| ||||| || | ||||| ||||| || || || ||
Sbjct 62024 AACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 61986
Score = 107 bits (118), Expect = 6e-18
Identities = 148/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | ||||| || ||||| || || || || || ||
Sbjct 61920 CATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 61861
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || ||||| || || || || || ||||| |||||
Sbjct 61860 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGG 61801
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || ||||| || || | || ||||| || || | ||| || | ||
Sbjct 61800 GGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTC 61741
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| ||||| || | ||||| |||||
Sbjct 61740 GACCTCAAGGGTGATGGTCTTGCCGGT 61714
>seq511
Length=493796
Score = 120 bits (132), Expect = 9e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| || || || || || ||
Sbjct 427641 CATACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 427700
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || |||||||||||||| || || ||||| |||||
Sbjct 427701 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGG 427760
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || ||||| || || | || || | ||
Sbjct 427761 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTC 427820
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || ||||| || || || || ||||||||
Sbjct 427821 CACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 427871
>seq729
Length=525681
Score = 111 bits (122), Expect = 5e-19
Identities = 435/674 (65%), Gaps = 10/674 (1%)
Strand=Plus/Plus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
||||| || ||||| |||||||| |||||||| || || || | ||| || || || ||
Sbjct 297160 GAAATCATCGCAAACGATCAAGGAAACAGAACCACACCGTCTTTCGTCGCCTTCACGGAC 297219
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| |||| || ||| | || || || || | || || || | || |||
Sbjct 297220 ACGGAGCGTCTGATCGGCGATGCGGCCAAGAACCAGGTGGCGATGAACCCGCACAACACG 297279
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGA 349440
|| || || || ||||| || || || | ||||| | ||| || | ||
Sbjct 297280 GTGTTCGACGCCAAGCGCCTGATCGGGCGCAAGTTCAAC-GACCCGGAGGTGCAGGCCGA 297338
Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGA-CGGTGATAAACCAATTATTGAGG 349499
| || || || || || | || || | | |||| ||| || || | || ||||
Sbjct 297339 CATGAAGCACTTCCCGTTCAAGGTGGT-CGACAAGAACGGC---AAGCCCAACATCGAGG 297394
Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558
| || | || || || || || || || ||||| || || || | ||||| |
Sbjct 297395 TCGAGTTCAAGGGCGAGACCAAGACG-TTCACGCCCGAGGAGATCTCGGCCATGGTCCTG 297453
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
|| || ||| || | ||| || || | | |||| || | | || || |
Sbjct 297454 GTCAAGATGCGCGAGACTGCCGAGGCTTTCCTCGGTGGCCAGGTCAACAACGCCGTCGTC 297513
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || ||||| || || || |||||||| || || || || || || ||||
Sbjct 297514 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATT 297573
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || || || | || || || || ||||| || || || || || || ||
Sbjct 297574 GCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGC 297633
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
|| || || | | || || || |||| || || ||| | |||||||||||
Sbjct 297634 CTGGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTCGGTGGTGGTACC 297693
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || || || |||| ||||| || || || || || | || ||||||
Sbjct 297694 TTCGATGTGTCCCTCCTGACCATTGAGGAGGGCATCTTCGAGGTCAAGTCCACCGCTGGT 297753
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||| || || || || || || ||||| || || || || ||
Sbjct 297754 GACACCCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCGTCAACGAG 297813
Query 349919 TTTAAGCGTCAAGC 349932
|| ||||| |||||
Sbjct 297814 TTCAAGCG-CAAGC 297826
>seq1269
Length=112330
Score = 86.0 bits (94), Expect = 2e-11
Identities = 98/131 (75%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| || |||||| | || || ||| || || | |||||| || || ||||| || ||
Sbjct 103651 CGAGGGACACCAAGCGTGACGTTC---TTGGAAGAAACACCGGCGAAATGGAATGTGTTC 103595
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| |||||||||||| ||||| |||||||| || || ||||| ||
Sbjct 103594 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATGACACCGACCATCTCA 103535
Query 377578 CCAGGATTGAC 377588
||||| ||||
Sbjct 103534 CCAGGGCTGAC 103524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515229161543900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |