Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq319 322 5e-83 seq829 109 6e-19 >seq319 Length=296375 Score = 322 bits (356), Expect = 5e-83 Identities = 534/764 (70%), Gaps = 24/764 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | |||||| ||||||||| ||| ||| || || ||| Sbjct 226830 TCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTCATCGAAACCTACA 226889 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| |||| ||| || |||||| | || || || |||||||| |||| Sbjct 226890 ACCTGATGTCGAGC---AAGTTCTTCACTCACGCCTCTCCCACACTCTTCAACGCCGGTA 226946 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | ||| | ||| |||| |||||||| || | |||||||| ||||| || || | Sbjct 226947 CCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGACTCTATTGAGG 227006 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | ||||| || || |||||| || ||| ||||||||| | | ||||| || ||| Sbjct 227007 GTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGCATTGGTC 227066 Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || || | || |||| || | |||| || || || |||||||| | | Sbjct 227067 TCAACG--TCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAACGGTACCTC 227124 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || |||| ||||||||||| |||||||||||||| || || |||||| ||||||| Sbjct 227125 CAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGG 227184 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| |||||| || | |||||||| ||||| ||||| ||||||||||| | | Sbjct 227185 TGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGATGTCTT 227244 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 || || | || |||| ||| || || | || ||| | ||| ||||||||| || Sbjct 227245 CGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGACCTTTT 227304 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 || || |||||||| |||||||||||| | | |||||||||| | | ||| ||| Sbjct 227305 CCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGACTGGAC 227364 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 || |||||||| ||||| ||||| ||||| | | || |||||| ||||||||| | | Sbjct 227365 TCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTG-CTACGGCGAGGAGTTTGAGG 227423 Query 53787 AGATGTATCGGACGTAC--GCAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 |||| || |||| |||| | |||| ||| |||| | ||||| | Sbjct 227424 CCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGC------AAGACCATGAAGGCTC 227477 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| |||| |||||| || |||| ||||| || | || | |||| || Sbjct 227478 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCT 227537 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 |||||||| | | |||| |||||||||||||||||| | ||| Sbjct 227538 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGC 227581 Score = 138 bits (152), Expect = 1e-27 Identities = 547/846 (65%), Gaps = 26/846 (3%) Strand=Plus/Plus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||| ||||| || || | || || || ||||||||| | ||||| Sbjct 227705 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATC 227764 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| || ||||||| | | | ||| ||||| |||| | || ||||| |||||| Sbjct 227765 GACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATC 227824 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | ||||||| ||||| | || || |||| || ||| | |||||||||| || Sbjct 227825 GGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGCCCTTCGAGTCT 227884 Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGA 55335 ||||| || | ||| || | |||||| || | ||||||| || || ||| Sbjct 227885 CCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGAC-CATCTACCACGCTGCCCTCAC 227943 Query 55336 GGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGC 55395 |||| || ||||| | | ||||| ||||| |||||| | | ||| || | Sbjct 227944 CATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTGT 228003 Query 55396 TGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATGTT-TG 55448 | |||| | ||||||| || | ||| | |||| || || | | | || Sbjct 228004 TTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTG 228063 Query 55449 ACAAG--TTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506 | | |||||| | | ||| | | || | |||||||| || ||||| ||||| Sbjct 228064 GGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCC 228123 Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566 ||||| || || || | |||||| |||||||||||||| || ||||| ||||| Sbjct 228124 CATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACAC 228183 Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCT 55626 |||||||||||| ||| || || || |||||||| | ||||| || Sbjct 228184 CTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGCT 228243 Query 55627 CGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT-ATT 55681 | | ||||| || | || |||| ||| | || |||| || || ||| Sbjct 228244 CTTGAAGGATCTCGTCGACATGGGTCTGTGG--TCCGATGCCATGAAGAACCGCATCATT 228301 Query 55682 GTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCT-CTGCGTCTCAAGGAGAT 55737 | |||| || ||| ||||||| | | |||||| ||| | |||||| | Sbjct 228302 GCCGAGAAC---GGTTCCATCCAGAACATCCCCAACATTCCTACTGAG-GTCAAGGCCCT 228357 Query 55738 TTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGG 55797 ||| ||| || |||||||| | ||| | | | | | ||| ||| || ||||| Sbjct 228358 GTACAAGACTGTTTGGGAGATCTCGCAGCGTACTGTTGTGCAGATGGCTGCCGACCGTGG 228417 Query 55798 TGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAA 55857 ||| | |||||||||||| ||||| || ||||| |||| || | || | ||| ||| Sbjct 228418 TGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGGCAA 228477 Query 55858 GTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCT 55917 | | | | ||||| || ||| |||||| || || |||||||| |||||||| || Sbjct 228478 GATAACCAGCATGCATTTCGCCGGCTGGAAGCTCGGCCTGAAGACGGGCATGTACTACCT 228537 Query 55918 GCGGAC 55923 ||| || Sbjct 228538 GCGCAC 228543 >seq829 Length=172105 Score = 109 bits (120), Expect = 6e-19 Identities = 183/263 (70%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| || ||||||||| ||||| |||||||| | |||||| | ||| Sbjct 106240 AATGTAACGAGGACTGGCAGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGA 106299 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 |||||||| | ||| | |||||| | ||| || ||||| || || | | | || || Sbjct 106300 CGGCTCCAGGCAGTTGATGTTGTTAGAGCCTACGAAGTTCTGCGCAAGGCCAATGATGGT 106359 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 ||||| || || || ||||| || | ||||||||| | | ||| || |||| Sbjct 106360 CTGCTGGAGAGAGGCTTCGCCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAA 106419 Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547 | | |||||| || |||| | |||| |||||| ||||| || || ||||| Sbjct 106420 TTCGACGACCTTCTGATCCTTGAC--TAAGTTCCTCTTGAAACAGGCGTATATAACCTTA 106477 Query 117548 CGCTGACTTGGCTTCAGACCATC 117570 ||||| | ||||||| ||||| Sbjct 106478 CGCTGGCCGGGCTTCAATCCATC 106500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207107740000