Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq319 322 5e-83
seq829 109 6e-19
>seq319
Length=296375
Score = 322 bits (356), Expect = 5e-83
Identities = 534/764 (70%), Gaps = 24/764 (3%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| |||||| | |||||| ||||||||| ||| ||| || || |||
Sbjct 226830 TCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTCATCGAAACCTACA 226889
Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
|| | ||| ||| |||| ||| || |||||| | || || || |||||||| ||||
Sbjct 226890 ACCTGATGTCGAGC---AAGTTCTTCACTCACGCCTCTCCCACACTCTTCAACGCCGGTA 226946
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
| ||| | ||| |||| |||||||| || | |||||||| ||||| || || |
Sbjct 226947 CCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGACTCTATTGAGG 227006
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
| ||||| || || |||||| || ||| ||||||||| | | ||||| || |||
Sbjct 227007 GTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGCATTGGTC 227066
Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487
|| || || | || |||| || | |||| || || || |||||||| | |
Sbjct 227067 TCAACG--TCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAACGGTACCTC 227124
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| | || |||| ||||||||||| |||||||||||||| || || |||||| |||||||
Sbjct 227125 CAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGG 227184
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
||| |||||| || | |||||||| ||||| ||||| ||||||||||| | |
Sbjct 227185 TGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGATGTCTT 227244
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667
|| || | || |||| ||| || || | || ||| | ||| ||||||||| ||
Sbjct 227245 CGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGACCTTTT 227304
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
|| || |||||||| |||||||||||| | | |||||||||| | | ||| |||
Sbjct 227305 CCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGACTGGAC 227364
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACG 53786
|| |||||||| ||||| ||||| ||||| | | || |||||| ||||||||| | |
Sbjct 227365 TCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTG-CTACGGCGAGGAGTTTGAGG 227423
Query 53787 AGATGTATCGGACGTAC--GCAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840
|||| || |||| |||| | |||| ||| |||| | ||||| |
Sbjct 227424 CCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGC------AAGACCATGAAGGCTC 227477
Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900
|| | ||| |||| |||||| || |||| ||||| || | || | |||| ||
Sbjct 227478 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCT 227537
Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944
|||||||| | | |||| |||||||||||||||||| | |||
Sbjct 227538 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGC 227581
Score = 138 bits (152), Expect = 1e-27
Identities = 547/846 (65%), Gaps = 26/846 (3%)
Strand=Plus/Plus
Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156
||||| | ||||| ||||| || || | || || || ||||||||| | |||||
Sbjct 227705 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATC 227764
Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216
||| || ||||||| | | | ||| ||||| |||| | || ||||| ||||||
Sbjct 227765 GACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATC 227824
Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276
| ||||||| ||||| | || || |||| || ||| | |||||||||| ||
Sbjct 227825 GGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGCCCTTCGAGTCT 227884
Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGA 55335
||||| || | ||| || | |||||| || | ||||||| || || |||
Sbjct 227885 CCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGAC-CATCTACCACGCTGCCCTCAC 227943
Query 55336 GGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGC 55395
|||| || ||||| | | ||||| ||||| |||||| | | ||| || |
Sbjct 227944 CATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTGT 228003
Query 55396 TGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATGTT-TG 55448
| |||| | ||||||| || | ||| | |||| || || | | | ||
Sbjct 228004 TTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTG 228063
Query 55449 ACAAG--TTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506
| | |||||| | | ||| | | || | |||||||| || ||||| |||||
Sbjct 228064 GGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCC 228123
Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566
||||| || || || | |||||| |||||||||||||| || ||||| |||||
Sbjct 228124 CATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACAC 228183
Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCT 55626
|||||||||||| ||| || || || |||||||| | ||||| ||
Sbjct 228184 CTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGCT 228243
Query 55627 CGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT-ATT 55681
| | ||||| || | || |||| ||| | || |||| || || |||
Sbjct 228244 CTTGAAGGATCTCGTCGACATGGGTCTGTGG--TCCGATGCCATGAAGAACCGCATCATT 228301
Query 55682 GTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCT-CTGCGTCTCAAGGAGAT 55737
| |||| || ||| ||||||| | | |||||| ||| | |||||| |
Sbjct 228302 GCCGAGAAC---GGTTCCATCCAGAACATCCCCAACATTCCTACTGAG-GTCAAGGCCCT 228357
Query 55738 TTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGG 55797
||| ||| || |||||||| | ||| | | | | | ||| ||| || |||||
Sbjct 228358 GTACAAGACTGTTTGGGAGATCTCGCAGCGTACTGTTGTGCAGATGGCTGCCGACCGTGG 228417
Query 55798 TGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAA 55857
||| | |||||||||||| ||||| || ||||| |||| || | || | ||| |||
Sbjct 228418 TGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGGCAA 228477
Query 55858 GTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCT 55917
| | | | ||||| || ||| |||||| || || |||||||| |||||||| ||
Sbjct 228478 GATAACCAGCATGCATTTCGCCGGCTGGAAGCTCGGCCTGAAGACGGGCATGTACTACCT 228537
Query 55918 GCGGAC 55923
||| ||
Sbjct 228538 GCGCAC 228543
>seq829
Length=172105
Score = 109 bits (120), Expect = 6e-19
Identities = 183/263 (70%), Gaps = 4/263 (2%)
Strand=Plus/Plus
Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369
||||||||||| || ||||||||| ||||| |||||||| | |||||| | |||
Sbjct 106240 AATGTAACGAGGACTGGCAGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGA 106299
Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429
|||||||| | ||| | |||||| | ||| || ||||| || || | | | || ||
Sbjct 106300 CGGCTCCAGGCAGTTGATGTTGTTAGAGCCTACGAAGTTCTGCGCAAGGCCAATGATGGT 106359
Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489
||||| || || || ||||| || | ||||||||| | | ||| || ||||
Sbjct 106360 CTGCTGGAGAGAGGCTTCGCCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAA 106419
Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547
| | |||||| || |||| | |||| |||||| ||||| || || |||||
Sbjct 106420 TTCGACGACCTTCTGATCCTTGAC--TAAGTTCCTCTTGAAACAGGCGTATATAACCTTA 106477
Query 117548 CGCTGACTTGGCTTCAGACCATC 117570
||||| | ||||||| |||||
Sbjct 106478 CGCTGGCCGGGCTTCAATCCATC 106500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547207107740000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |