Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq84 127 2e-24
>seq84
Length=81435
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059
|| || || || ||||||||| | || || ||||| || || | || || | || ||
Sbjct 61986 GTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCGAC 62045
Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119
| ||||| ||| ||||| |||||||| ||||| || || || || ||||| || ||
Sbjct 62046 AATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGCTTGATC 62105
Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179
| ||| ||||| || | || ||| | |||| | ||||||||||||||||| ||||||
Sbjct 62106 TTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAGGAG 62165
Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||| | || ||||| ||||| | || ||||| ||
Sbjct 62166 TCCACCCTCCACTTGGTGCTGCGTCTCCGTGGTGGTAT 62203
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || |||||| ||||||| ||||| || ||| ||||
Sbjct 62202 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 62261
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || || ||||| || ||||| || ||||| ||
Sbjct 62262 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 62321
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | || || || || ||||| || || ||| | |||||||||
Sbjct 62322 CAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAAC 62381
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || ||||||||||| | ||| | || | ||| |||| || ||
Sbjct 62382 ATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGG 62428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434911332576000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |