Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq930 114 1e-20 >seq930 Length=1444712 Score = 114 bits (126), Expect = 1e-20 Identities = 213/302 (71%), Gaps = 8/302 (3%) Strand=Plus/Plus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCC 34379 ||| || ||||||||||||| |||| || || || || || |||| ||| ||| || Sbjct 976945 GGGCGTCAAGATCTGGGACGGCAACGGCTCGCGCGAGTTCCTCGACA-GCGTTGGTCTCT 977003 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | || || | |||||| | ||||| |||||||| ||||| ||| |||||||||| | Sbjct 977004 CGCACCGCGAAGTTGGCGACCTCGGCCCTGTCTACGGTTTCCAATGGCGACACTTTGGCG 977063 Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497 | |||||| | | || ||| |||| || |||| ||||| | |||||||| || | | Sbjct 977064 CCGAGTAT-GTCGACGCCAAGACGGATTACACGGGCCAGGGCGTCGACCAGCTCGCCG-A 977121 Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557 || ||| ||| ||||| ||| || | ||| | | ||| | | |||||||||| Sbjct 977122 GGTCATCCACAAGCTGAAGACGAATCCGTACGACCGCCGCATCCTCCTCAGCGCGTGGAA 977181 Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACG 34616 ||| ||| || |||||| ||||| || ||||||| | ||| || ||||||| Sbjct 977182 CCCCGCGGACCTAAAGAAGATGGCCCTCCCGCCATGCCACA-TGTTTGCGCAGTTCTACG 977240 Query 34617 TC 34618 || Sbjct 977241 TC 977242 Score = 114 bits (126), Expect = 1e-20 Identities = 213/302 (71%), Gaps = 8/302 (3%) Strand=Plus/Minus Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||||||| || ||| | ||||||| || ||||| |||||| || ||| | Sbjct 977242 GACGTAGAACTGCGCAAACA-TGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGG 977184 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 |||||||||||| | | ||| | | ||| | || ||| ||||| ||| ||| | Sbjct 977183 GGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGATGA 977124 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903 | | | || |||||||| | ||||| |||| || |||| ||| || | | |||||| Sbjct 977123 CCT-CGGCGAGCTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGAC-ATACTC 977066 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 || |||||||||| ||| ||||| |||||||| ||||| | |||||| | || || Sbjct 977065 GGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTG 977006 Query 6964 TGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022 | || ||| ||| |||| || || || || || |||| ||||||||||||| || | Sbjct 977005 CGAGAGACCAACGC-TGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGC 976947 Query 7023 CC 7024 || Sbjct 976946 CC 976945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448255115736000