Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq84 134 3e-26
seq1155 125 2e-23
seq511 125 2e-23
seq319 122 2e-22
>seq84
Length=81435
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| || || || || || || |||| |||||||| ||| || | |||||
Sbjct 62413 AGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCC 62354
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| ||||| |||||||| || || |||||||| ||||| || ||||||||
Sbjct 62353 TCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 62294
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || |||||||||||||| | ||| || || | || || |||
Sbjct 62293 TGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 62234
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 62233 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202
>seq1155
Length=26199
Score = 125 bits (138), Expect = 2e-23
Identities = 198/281 (70%), Gaps = 7/281 (2%)
Strand=Plus/Minus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500
|| ||||||||||| |||| | ||||| || | ||||||| || ||| | |
Sbjct 22858 ACTTTATATTTAATTTTTGCTTTATTTTCAGGGTTATTAGGTACAGCTTTCTCTGTATTA 22799
Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTG-AGTGGTAATAGCCAACTTT 7558
||||| ||||||||| || || ||| |||| ||||| || ||| |||| | |
Sbjct 22798 ATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATTTCAG-----ATAACCAATTAT 22744
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
| || ||| ||||| || ||||| | ||||||| |||||| | ||||||||||
Sbjct 22743 ATAATAGTATAATTACAGCTCATGCTATACTTATGATATTCTTTATGGTTATGCCGGCAT 22684
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| || || ||||| || || | || | ||||||||| | |||| ||||||||||| |
Sbjct 22683 TAATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGACCTGATATGGCAT 22624
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
| || || | || || |||||||| ||| || |||| |||
Sbjct 22623 TCCCTAGATTAAATAACATAAGTTTCTGACTATTACCTCCT 22583
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || |||||||| |||||||| | |||||| || | |||||||| ||||| || |
Sbjct 22178 TTCTGGGTGACCAAAGAATCAGAAAAGATGTTGGTATAATATAGGATCACCTCCACCAGC 22237
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773
|| || || || ||||||||||||||||| ||||||||
Sbjct 22238 TGTTTCGAAGAATGATGTATTAAAATTTCTATCTGTTAAAAC 22279
>seq511
Length=493796
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| | ||| || ||||| || || |||| ||||| |||| | ||
Sbjct 427650 ACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 427709
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||| ||||| || || || ||||| || || || ||
Sbjct 427710 GCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCC 427769
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 427770 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 427829
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| ||||| | || || | ||| | |||||
Sbjct 427830 GGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 427871
>seq319
Length=296375
Score = 122 bits (134), Expect = 2e-22
Identities = 190/272 (70%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
||||||||| |||| || | ||| || ||||||| |||||||| | || |||
Sbjct 227571 TTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCG 227512
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| || || |||| ||| || ||| || | ||||| |||| ||| | | ||||
Sbjct 227511 GTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCATGGTCTTGCGACCCTTG 227452
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| | ||||||||| ||||||| ||||||| || | |||||| ||| | ||
Sbjct 227451 CCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGG 227392
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || ||| || ||||| | |||| |||| || |||| | |||||||||||||||
Sbjct 227391 CCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATG 227332
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
|||||||| | |||| | |||| ||||||
Sbjct 227331 AAGAGGTCGGGAATCCAGAGGGCGAGGAAAAG 227300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192511336902200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |