Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq930 98.7 7e-16 >seq930 Length=1444712 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558 ||||| || || || || | ||||||||| ||||| || || || ||||| || |||| Sbjct 977070 TACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCG 977011 Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618 | |||| || || |||| | || || | || |||||| ||||||||||||| Sbjct 977010 CGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTG 976951 Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTC 27677 || ||| |||| || | |||| |||| ||||| |||||||||||||||||| Sbjct 976950 ACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTC 976892 Query 27678 CTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726 | | |||||| | || ||||| | ||| || || |||||||| ||| Sbjct 976891 AGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTAGTAAGGAGGGGCAAC 976843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369501345620300