Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq930 98.7 7e-16
>seq930
Length=1444712
Score = 98.7 bits (108), Expect = 7e-16
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558
||||| || || || || | ||||||||| ||||| || || || ||||| || ||||
Sbjct 977070 TACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCG 977011
Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618
| |||| || || |||| | || || | || |||||| |||||||||||||
Sbjct 977010 CGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTG 976951
Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTC 27677
|| ||| |||| || | |||| |||| ||||| ||||||||||||||||||
Sbjct 976950 ACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTC 976892
Query 27678 CTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726
| | |||||| | || ||||| | ||| || || |||||||| |||
Sbjct 976891 AGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTAGTAAGGAGGGGCAAC 976843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369501345620300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |