Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq84 125 2e-23
seq511 114 3e-20
seq1288 84.2 5e-11
>seq84
Length=81435
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||||||||| || ||||| || |||||||||||||| || || | |||||
Sbjct 62413 AGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCC 62354
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || || || |||||||| | ||||||||| | | || || ||||| ||
Sbjct 62353 TCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 62294
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || ||||| | || | | ||||||| || || ||||| ||||||||
Sbjct 62293 TGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 62234
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||| ||||| ||||||| ||||||
Sbjct 62233 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202
Score = 84.2 bits (92), Expect = 5e-11
Identities = 138/198 (70%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || || ||||||||||||| | || | || || || |
Sbjct 62180 CAAG-TGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAA 62122
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || |||||||| | | ||||||||| | | || || || || || ||||
Sbjct 62121 GCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAA 62062
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| ||| |||||| | || | | | || ||| ||| || ||||| || || || ||||
Sbjct 62061 TCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGC 62002
Query 152077 CCGTGAGAGTCTTCACGA 152094
| || || ||||| ||||
Sbjct 62001 CGGTAAGCGTCTTGACGA 61984
>seq511
Length=493796
Score = 114 bits (126), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||||| || ||||| || ||||||||||| |||| | || | || ||
Sbjct 427660 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 427719
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || || ||||| || | ||||||||| | | ||| || ||||| |
Sbjct 427720 TCGAGCTGCTTT--CCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGT 427777
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || |||||| | || | | |||| ||| ||| || ||||| || ||||
Sbjct 427778 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAG 427837
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || ||||| || ||||| ||||||| ||||||
Sbjct 427838 TCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 427871
>seq1288
Length=383550
Score = 84.2 bits (92), Expect = 5e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | || | || || || || || |||||||||||
Sbjct 214322 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 214263
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
| | ||||||||| | | ||| || ||||| || || || || |||||| | ||
Sbjct 214262 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 214203
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| |||| || ||| || ||||| ||||| || || ||||| || |||||||||||
Sbjct 214202 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 214144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153801581672300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |