Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq511 172 1e-37
seq84 158 3e-33
seq1288 143 6e-29
seq360 86.0 1e-11
>seq511
Length=493796
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || |||| || | ||| || || |||||||||||||| |
Sbjct 427644 ACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 427703
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || |||||||||| || || |||||| ||
Sbjct 427704 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 427763
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || || | ||||| ||||| |||| || ||
Sbjct 427764 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 427823
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||||||||| | ||||| ||||| ||||||||
Sbjct 427824 CTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 427871
>seq84
Length=81435
Score = 158 bits (174), Expect = 3e-33
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||| |||||||| ||||| || ||||| | ||| || || ||||||||||| |||
Sbjct 62429 ACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACT 62370
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| ||||| |||||||| | || || || |||||||| | ||| || ||||| |
Sbjct 62369 CAAG-GTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAG 62311
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||| ||||||||||| |||||||| | || ||| | ||||| ||||| || | |||||
Sbjct 62310 GAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGA 62251
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || || || ||||| || || | ||||| ||||| ||||||||
Sbjct 62250 CCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202
Score = 138 bits (152), Expect = 2e-27
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | ||| || || |||||||||||||| |
Sbjct 61917 ACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 61858
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || ||||| || |||| || || |||||| ||
Sbjct 61857 CAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGG 61798
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||||| || || | ||||| || || || | |||||
Sbjct 61797 AATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGAC 61738
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
|| || ||||| ||||| || ||
Sbjct 61737 CTCAAGGGTGATGGTCTTGCCGGT 61714
>seq1288
Length=383550
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || |||||||| ||||| || || || ||||| ||||||
Sbjct 214322 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 214263
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || ||||| || || ||||||||||| |||||||| | || || | |||
Sbjct 214262 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 214203
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| || || || || ||||||||||||| ||||| |||||
Sbjct 214202 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 214144
>seq360
Length=228796
Score = 86.0 bits (94), Expect = 1e-11
Identities = 159/233 (68%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545
|| |||||||| | | |||||||| || | ||| | ||||| || || || ||| |
Sbjct 171926 CGACCCCACTTCAGGGCCTTGACAATGGAGTTGAAATTATCGTCCATGAGAATGATCGAG 171985
Query 312546 GCTGCTTCCTTTGCAATGTCTGTACC---ACTCCCCATTGCACACCCGACGTCTGCTTCC 312602
| |||||||| |||| || ||||| | | ||||| | | |||||||| || |
Sbjct 171986 GACGCTTCCTTGGCAACTTCGGTACCGGCAATACCCATGGAGAAGCCGACGTCGGCCGTC 172045
Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662
|| || || || || ||||| | || || || || || |||| || || |||||
Sbjct 172046 TTGAGCGCGGGAGCATCGTTGGTTCCGTCTCCGGTCACAGCAACGATGTCACCCTGGGCC 172105
Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAAC 312715
|| | | ||| ||||| || ||| ||||| ||| || |||||||||||
Sbjct 172106 TTGAGGCGCTTCACCAAGATACGCTTGTCCTCGGGGCTGGAGCGGGCAAGAAC 172158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046721765250200
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