Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq511 154 1e-32
seq84 132 3e-26
seq1288 122 6e-23
>seq511
Length=493796
Score = 154 bits (170), Expect = 1e-32
Identities = 177/236 (75%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||| | || |||| |||||| ||| |||||| ||||||||||| ||
Sbjct 427641 CATACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 427700
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| ||| ||| |||| || |||||||| || |||||||||| |||||||| || |
Sbjct 427701 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGG 427760
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284
|| | || ||||| ||| ||||| ||| || ||| | |||||||||| ||
Sbjct 427761 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGAC 427818
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
|||||||| | || || ||||| ||||| |||||||| |||||||| ||||||||
Sbjct 427819 TCCACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGAT 427874
>seq84
Length=81435
Score = 132 bits (146), Expect = 3e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|| || |||||||| |||||| |||||||||||||| | || || || | || ||
Sbjct 62410 ACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTG-CGACCATCCTC 62352
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || |||||||| | ||||||||| || | ||| | || ||||| |||
Sbjct 62351 CAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 62292
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| | | | |||||||| | ||||| ||||| | ||||| |||||
Sbjct 62291 GATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTT 62232
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| |||||||| |||||
Sbjct 62231 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202
Score = 102 bits (112), Expect = 6e-17
Identities = 137/189 (72%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| |||||| ||||||||||| |||| || ||| |||| ||
Sbjct 61898 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 61839
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || |||| |||||||| || | || | || ||||| |||
Sbjct 61838 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGG 61779
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | ||||| |||| ||| || ||||| | || || ||||
Sbjct 61778 ATCTTTGACTTGACATTGT--CGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCT 61721
Query 44307 TTCCCGTGA 44315
| || ||||
Sbjct 61720 TGCCGGTGA 61712
Score = 95.1 bits (104), Expect = 9e-15
Identities = 156/223 (70%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||||| ||| || ||| |||||| || |||||||||||
Sbjct 62204 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 62145
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| || || |||| || |||||||| || || |||||||| |||||||| || |
Sbjct 62144 GGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGG 62085
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284
|| | || || || ||| ||||| ||| || ||| | ||||| || | ||
Sbjct 62084 GGGAATGCCCTCTTTGTCCTGAATCTTTGACTTGACATTGT--CGATGGTATCAGAAGAC 62027
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327
|| ||||| | || || ||||| || || || ||||| ||||
Sbjct 62026 TCAACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 61984
>seq1288
Length=383550
Score = 122 bits (134), Expect = 6e-23
Identities = 138/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| ||| |||| || |||||||| ||||| ||||
Sbjct 214324 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 214265
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 214264 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 214205
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | ||||| ||||| ||||| |||||||||||
Sbjct 214204 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 214147
Query 44326 GAA 44328
|||
Sbjct 214146 GAA 214144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359984696402100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |