Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq511 154 1e-32 seq84 132 3e-26 seq1288 122 6e-23 >seq511 Length=493796 Score = 154 bits (170), Expect = 1e-32 Identities = 177/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||| |||||| ||| |||||| ||||||||||| || Sbjct 427641 CATACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 427700 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| |||| || |||||||| || |||||||||| |||||||| || | Sbjct 427701 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGG 427760 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | || ||||| ||| ||||| ||| || ||| | |||||||||| || Sbjct 427761 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGAC 427818 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||||||| | || || ||||| ||||| |||||||| |||||||| |||||||| Sbjct 427819 TCCACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGAT 427874 >seq84 Length=81435 Score = 132 bits (146), Expect = 3e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || || |||||||| |||||| |||||||||||||| | || || || | || || Sbjct 62410 ACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTG-CGACCATCCTC 62352 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || |||||||| | ||||||||| || | ||| | || ||||| ||| Sbjct 62351 CAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 62292 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | |||||||| | ||||| ||||| | ||||| ||||| Sbjct 62291 GATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTT 62232 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 62231 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 62202 Score = 102 bits (112), Expect = 6e-17 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| ||||||||||| |||| || ||| |||| || Sbjct 61898 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 61839 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || |||| |||||||| || | || | || ||||| ||| Sbjct 61838 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGG 61779 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| |||| ||| || ||||| | || || |||| Sbjct 61778 ATCTTTGACTTGACATTGT--CGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCT 61721 Query 44307 TTCCCGTGA 44315 | || |||| Sbjct 61720 TGCCGGTGA 61712 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||| ||| || ||| |||||| || ||||||||||| Sbjct 62204 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 62145 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || |||| || |||||||| || || |||||||| |||||||| || | Sbjct 62144 GGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGG 62085 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | || || || ||| ||||| ||| || ||| | ||||| || | || Sbjct 62084 GGGAATGCCCTCTTTGTCCTGAATCTTTGACTTGACATTGT--CGATGGTATCAGAAGAC 62027 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 || ||||| | || || ||||| || || || ||||| |||| Sbjct 62026 TCAACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 61984 >seq1288 Length=383550 Score = 122 bits (134), Expect = 6e-23 Identities = 138/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| ||| |||| || |||||||| ||||| |||| Sbjct 214324 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 214265 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 214264 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 214205 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 214204 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 214147 Query 44326 GAA 44328 ||| Sbjct 214146 GAA 214144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984696402100