Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq84 141 2e-28
seq511 132 1e-25
seq1288 122 2e-22
>seq84
Length=81435
Score = 141 bits (156), Expect = 2e-28
Identities = 157/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || || ||||| ||||| ||| ||||||
Sbjct 62205 CAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCAGAC 62264
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || || ||||| ||||||||
Sbjct 62265 ACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 62324
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| |||||||| || || || ||| | || ||||| | || |||| ||||| ||| |
Sbjct 62325 CGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCAC-CTTGAGTGATTACAACAT 62383
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
||| || || || || || ||||||||
Sbjct 62384 CCAGAAGGAGTCGACGCTTCATCTTGT 62410
Score = 129 bits (142), Expect = 1e-24
Identities = 148/198 (75%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || || || || || || |||||||| ||||| || || || |||||||
Sbjct 61984 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 62043
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| |||||||||||||||||| || || || || |||||||| || | |
Sbjct 62044 ACAATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGCTTGA 62103
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||| || || ||||| || || ||| |||| || ||||||| ||| | || || |
Sbjct 62104 TCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAGG 62163
Query 178111 AATCAACACTGCATCTTG 178128
| || || || || ||||
Sbjct 62164 AGTCCACCCTCCA-CTTG 62180
Score = 122 bits (134), Expect = 2e-22
Identities = 141/189 (75%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||| ||||| || ||| || |||||||| || |||||
Sbjct 61712 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 61771
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||| |||||||| || || || || || |||||||| || || || ||||||||||
Sbjct 61772 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 61831
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || || || | || || |||| || ||| |||| || || || || || |
Sbjct 61832 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 61891
Query 178123 ATCTTGTTT 178131
| |||| ||
Sbjct 61892 A-CTTGGTT 61899
>seq511
Length=493796
Score = 132 bits (146), Expect = 1e-25
Identities = 153/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || |||||||| |||||||| || |||
Sbjct 427868 CAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 427809
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 427808 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 427749
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || ||||| |||||||| || || | || || |||| || ||| ||
Sbjct 427748 CGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 427689
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 427688 CAGAAGGAGTCCACCCTTCA-CTTG 427665
>seq1288
Length=383550
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || || ||||| ||||| || ||| ||||| ||
Sbjct 214143 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 214202
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || ||||| || |||||||| || |
Sbjct 214203 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 214262
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || |||||||| || || | || || |||| || ||| |||| ||
Sbjct 214263 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 214322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203711150352200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |