Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq511 158 1e-33 seq1288 141 9e-29 seq84 127 2e-24 seq25 87.8 2e-12 >seq511 Length=493796 Score = 158 bits (174), Expect = 1e-33 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| ||||||||| Sbjct 427645 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 427704 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| || || || ||||||||||| ||||| | ||| Sbjct 427705 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 427764 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | |||||| ||||||| Sbjct 427765 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 427822 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || |||||||| || ||||| ||||| ||||||||| Sbjct 427823 CCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATG 427872 >seq1288 Length=383550 Score = 141 bits (156), Expect = 9e-29 Identities = 143/184 (78%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||| | Sbjct 214324 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 214265 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| |||||| ||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 214264 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 214205 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || ||||||||||| ||||| || Sbjct 214204 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 214147 Query 41851 GAAA 41854 |||| Sbjct 214146 GAAA 214143 >seq84 Length=81435 Score = 127 bits (140), Expect = 2e-24 Identities = 163/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||||||||| || ||||| Sbjct 62200 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 62141 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| ||||| |||| |||||| ||||| | |||| Sbjct 62140 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 62081 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||| |||||| ||| | |||| ||| || | || | || || ||||| Sbjct 62080 ATGCCCTCTTTGTCC-TGAATCTTTGACTTGACATTGTCG--ATGGTATCAGAAGACTCA 62024 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||||| | || || || || || || |||||||| |||| Sbjct 62023 ACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 61984 Score = 125 bits (138), Expect = 7e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| |||||||| Sbjct 61916 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 61857 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| |||||||| ||||||||||| ||||| | |||| Sbjct 61856 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 61797 Query 41756 ACGCTCTCCTTGTCCATGATTTTT 41779 | || |||||||||| ||| ||| Sbjct 61796 ATGCCCTCCTTGTCCTGGATCTTT 61773 >seq25 Length=387149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || || || || || ||||| ||||| |||| || |||||| ||||||||| ||| Sbjct 216022 CGCATTGCCCCCCGCTCCGGTCTCGCTGCCAAGAACTTCATCGACACGGGCGCCGGTGTC 216081 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||| ||||||||||| | |||| || | ||||||||||||| ||| Sbjct 216082 ATCGACGCTGACTACCGCGGCGAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 216134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462296487560000