Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq459 484 6e-132 seq576 140 3e-28 seq223 123 2e-23 seq718 89.7 5e-13 >seq459 Length=266450 Score = 484 bits (536), Expect = 6e-132 Identities = 1221/1844 (66%), Gaps = 30/1844 (2%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || ||||||||||||||||| || | |||||| || ||||| || Sbjct 93410 GTGCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTG 93351 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || |||| | ||||| | |||| |||||| ||| ||||| Sbjct 93350 GTTATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATG 93291 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||| ||||| | | | |||||| ||| || ||||| || ||| Sbjct 93290 AAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTC 93231 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 |||||||| | ||| ||| || || ||| |||||| ||| ||||| | | Sbjct 93230 TTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTGGATGGAACCGTTCTCG 93171 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| || || || | |||| ||||| ||| ||| || | ||| || | Sbjct 93170 GCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAG 93111 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGA 22503 || | |||| || || || ||||| || | ||||| | || || ||||| |||||||| Sbjct 93110 AGCCAAGGGTTGACAACCTGGAACTCACCAG-CAAGAACACGACGCTGGTAGATGTTGGA 93052 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 ||| | || || || | || ||||| |||| ||||| | ||| || |||||||| Sbjct 93051 GGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCAT 92992 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATC 22621 ||||| | || || ||||| | | ||||||| ||| | ||| | ||||| Sbjct 92991 GGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATC 92932 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 ||||||||| ||||| || ||| | ||||| |||||| || || || | | ||| Sbjct 92931 --CCAGTCCCAGAGATCCGAGGGCTTGACATT---CCACATGTCATACTGGAGGATGCCC 92877 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAG 22741 || | ||| || |||||||| | ||| || || | | ||| || | ||| Sbjct 92876 TGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCAC 92818 Query 22742 CT-CGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GC 22797 | | | || ||| || || ||||||||||| |||||||| | ||| || Sbjct 92817 CGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGC 92758 Query 22798 GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAAC 22857 ||| || || || | |||||||| | || ||| || || || | |||||| || Sbjct 92757 CTCGG-GAGACT--CGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGAC 92701 Query 22858 GCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGAT 22913 || | |||||| || |||| || || || |||| ||| | | ||| | Sbjct 92700 ACCGAGACCGATGGGGCGGTGGCGCATGTTG----CTGTTGCGAGCCTCCTGAACAGGGT 92645 Query 22914 ACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNN 22973 | || ||||| ||||||||| ||| | | || | | || | Sbjct 92644 AGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGA 92585 Query 22974 NNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGG 23030 | |||||||| || ||| ||||| ||||||| || | ||||| ||||| Sbjct 92584 GCTTCTGGAAGTCGTAGACTCCCTCGTTGTAGTCAACAAAGGTGGGCAGGGCGAGCGAGG 92525 Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGAT 23090 | || ||||| || || ||||| || | |||||| | ||| || || || || | Sbjct 92524 CCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGT 92465 Query 23091 TGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGT 23150 || | || ||||| | || |||||||||| || || ||| | |||||||| Sbjct 92464 TGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGT 92405 Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCT 23210 |||||||| | || | || |||||| ||| | ||||| ||| || ||| | ||| Sbjct 92404 AGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCT 92345 Query 23211 GAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCA 23269 |||| | | ||| || ||| ||| | ||||||||| | |||||| || ||| Sbjct 92344 GAGCCTTCATG-GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCA 92286 Query 23270 AATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCAC 23329 || || | ||||| |||||||||||||| || ||| | || ||||||||| |||| Sbjct 92285 AACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAG 92226 Query 23330 ATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGT 23389 | || || || | |||| || || || || ||||| || ||| ||| || Sbjct 92225 TCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGG 92166 Query 23390 TCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACG 23449 || |||||||| |||||||| |||||| |||||| ||||||||| ||||| || || Sbjct 92165 TCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACA 92106 Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 || || ||||| ||||| ||||||| ||| || || || || | ||| ||||| ||||| Sbjct 92105 TCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGG 92046 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCG 23569 |||||||| || || ||||||||| | || | ||||| || |||| ||||||||| | Sbjct 92045 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTA 91986 Query 23570 CCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629 ||| ||| || | | || || | || || | | ||| |||| || ||| ||| Sbjct 91985 CCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATG 91926 Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689 || ||| || || || ||||| ||||| || || ||||| ||||| ||||| || Sbjct 91925 CCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCAATA 91866 Query 23690 CTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCC 23749 |||||| || | |||| | ||| || || |||| || || | || ||| |||| Sbjct 91865 GAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCG 91806 Query 23750 GAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCG 23809 ||| ||||| || |||||| || ||| | ||||||| || ||||| || ||| Sbjct 91805 TTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGTTTCG 91746 Query 23810 ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGA 23869 ||| || |||| ||| || || ||||| | |||||| ||||| ||||||| || Sbjct 91745 ATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGG 91686 Query 23870 GGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAAT 23929 ||||||||| | | ||||| || |||| || ||||| | | || || || || Sbjct 91685 GGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGAAG 91626 Query 23930 CCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || | ||||| ||||| || || | || ||||| || Sbjct 91625 CCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGA 91582 >seq576 Length=178989 Score = 140 bits (154), Expect = 3e-28 Identities = 268/390 (69%), Gaps = 10/390 (3%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | | || ||||| | | | | || | |||||| || | Sbjct 150730 CAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCG 150789 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 || | || ||||||||||| || ||||| ||||| || ||| || | || || Sbjct 150790 TCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTT 150849 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| || || || |||||||| ||||| || ||||||| |||| || || Sbjct 150850 CTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCG 150909 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 || |||||||| || || || || || ||||| | ||||||||| |||| |||| Sbjct 150910 TGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCAC---CTCAA-GAACC 150965 Query 58154 GACGCGGGATCGCA--TCTT---GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | | | | | ||| || | |||||| ||| ||| || ||| ||| || | ||| Sbjct 150966 GCCCCAGCA-AGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAGATTGAGCAGGAG 151024 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | ||||| || || || || ||||||| |||||| | ||||| || Sbjct 151025 TTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 151084 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTG 58298 ||||||||||||||||||||| | || ||| Sbjct 151085 TACATTGAGTTTGTTGCCGACCGCCTCTTG 151114 >seq223 Length=337804 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || ||||| || | || || || | || Sbjct 245749 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 245690 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| ||| | || ||||||||| Sbjct 245689 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 245630 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || |||||||| || || |||| ||||| ||| Sbjct 245629 CAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTGAGTGATTACAAC 245570 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| |||||||| || ||| | ||| | || ||| Sbjct 245569 ATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGGT 245522 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || ||| | || || ||| |||| Sbjct 245977 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 245918 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | || ||||||||| Sbjct 245917 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 245858 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| ||||||| | || || || || ||| Sbjct 245857 CAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 245798 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || || || ||| | || | || |||| Sbjct 245797 ATCCAGAAGGAGTCTACCCTGCACCTTGTCCTTCGCCTCCGTGGAGGTA 245749 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || |||||| | || ||||| | || || | ||| Sbjct 246195 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 246136 Query 31263 AAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | ||||| || ||| | ||||||||| ||| | || || ||||||||||| | Sbjct 246135 ACAATGTCAAGTCAAAGATTCA-GGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCTTG 246077 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||| ||||| ||| | || ||| ||| || |||||| |||||||| || Sbjct 246076 ATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAG 246017 Query 31382 GAATCGACTCTTCATCTGGTACT 31404 || || || || || |||| || Sbjct 246016 GAGTCCACCCTCCACTTGGTGCT 245994 >seq718 Length=599240 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 159781 CAATCATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGT 159840 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | || || | Sbjct 159841 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTG 159900 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || || ||||| || ||| | || ||| || | ||| | Sbjct 159901 ACCAGCAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 159960 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || ||||| |||| || | ||| | || |||| Sbjct 159961 ACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGGTA 160014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761992484720